Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MTX16_RS24235 Genome accession   NZ_CP094624
Coordinates   4722392..4722679 (+) Length   95 a.a.
NCBI ID   WP_061457084.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain LX43     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4717392..4727679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTX16_RS24215 - 4718566..4718763 (+) 198 WP_017673210.1 DUF4083 domain-containing protein -
  MTX16_RS24220 - 4718795..4719256 (+) 462 WP_000024999.1 NUDIX hydrolase -
  MTX16_RS24225 nadE 4719306..4720124 (-) 819 WP_000174901.1 ammonia-dependent NAD(+) synthetase -
  MTX16_RS24230 - 4720395..4722275 (+) 1881 WP_017673209.1 ABC transporter permease -
  MTX16_RS24235 abrB 4722392..4722679 (+) 288 WP_061457084.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MTX16_RS24240 - 4722955..4723902 (+) 948 WP_000099760.1 serine protease -
  MTX16_RS24245 - 4723944..4724252 (-) 309 WP_001259906.1 helix-turn-helix transcriptional regulator -
  MTX16_RS24250 - 4724359..4725294 (+) 936 WP_000877965.1 aldo/keto reductase -
  MTX16_RS24255 - 4725342..4726517 (+) 1176 WP_001082495.1 MFS transporter -
  MTX16_RS30450 - 4726566..4726772 (+) 207 WP_017673205.1 hypothetical protein -
  MTX16_RS24260 - 4726916..4727278 (+) 363 WP_001198796.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10515.25 Da        Isoelectric Point: 5.1367

>NTDB_id=670300 MTX16_RS24235 WP_061457084.1 4722392..4722679(+) (abrB) [Bacillus thuringiensis strain LX43]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIGKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=670300 MTX16_RS24235 WP_061457084.1 4722392..4722679(+) (abrB) [Bacillus thuringiensis strain LX43]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGGAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)

AbrB C-terminal domain (AbrB_C)

(53-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.977

90.526

0.516