Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MTX16_RS20855 Genome accession   NZ_CP094624
Coordinates   4055760..4056083 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus thuringiensis strain LX43     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4050760..4061083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTX16_RS20830 - 4051071..4052357 (+) 1287 WP_000247031.1 D-alanyl-D-alanine carboxypeptidase family protein -
  MTX16_RS20835 - 4052548..4053117 (+) 570 WP_017672842.1 signal peptidase I -
  MTX16_RS20840 - 4053178..4053765 (+) 588 WP_000172852.1 CalY family protein -
  MTX16_RS20845 - 4053885..4054706 (+) 822 WP_080446915.1 DUF4047 domain-containing protein -
  MTX16_RS20850 calY 4055094..4055687 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  MTX16_RS20855 sinR 4055760..4056083 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  MTX16_RS20860 - 4056163..4056297 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  MTX16_RS20865 inhA1 4056640..4059030 (+) 2391 WP_017672843.1 M6 family metalloprotease immune inhibitor InhA1 -
  MTX16_RS20870 - 4059202..4060569 (+) 1368 WP_017672844.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=670297 MTX16_RS20855 WP_000578885.1 4055760..4056083(-) (sinR) [Bacillus thuringiensis strain LX43]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=670297 MTX16_RS20855 WP_000578885.1 4055760..4056083(-) (sinR) [Bacillus thuringiensis strain LX43]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692