Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MTX16_RS14670 Genome accession   NZ_CP094624
Coordinates   2859019..2859303 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis strain LX43     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2854019..2864303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTX16_RS14635 tmk 2854211..2854837 (+) 627 WP_061457945.1 dTMP kinase -
  MTX16_RS14640 holB 2854873..2855856 (+) 984 WP_000169564.1 DNA polymerase III subunit delta' -
  MTX16_RS14645 - 2855862..2856689 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  MTX16_RS14650 yabA 2856704..2857054 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  MTX16_RS14655 - 2857137..2857877 (+) 741 WP_001055366.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  MTX16_RS14660 - 2857864..2858154 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  MTX16_RS14665 rsmI 2858123..2858998 (+) 876 WP_000267823.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MTX16_RS14670 abrB 2859019..2859303 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MTX16_RS14675 metG 2859789..2861771 (+) 1983 WP_000134132.1 methionine--tRNA ligase -
  MTX16_RS14680 - 2861938..2862705 (+) 768 WP_000895853.1 TatD family hydrolase -
  MTX16_RS14685 rnmV 2862920..2863477 (+) 558 WP_000692835.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=670280 MTX16_RS14670 WP_000843036.1 2859019..2859303(-) (abrB) [Bacillus thuringiensis strain LX43]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=670280 MTX16_RS14670 WP_000843036.1 2859019..2859303(-) (abrB) [Bacillus thuringiensis strain LX43]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851