Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MTX16_RS14470 Genome accession   NZ_CP094624
Coordinates   2821708..2822835 (+) Length   375 a.a.
NCBI ID   WP_000470745.1    Uniprot ID   A0A9W5QA17
Organism   Bacillus thuringiensis strain LX43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2816708..2827835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTX16_RS14440 spoIIIJ 2816739..2817515 (-) 777 WP_017673752.1 YidC family membrane integrase SpoIIIJ -
  MTX16_RS14445 rnpA 2817568..2817915 (-) 348 WP_000726619.1 ribonuclease P protein component -
  MTX16_RS14450 rpmH 2817992..2818126 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  MTX16_RS14455 dnaA 2818691..2820031 (+) 1341 WP_000428017.1 chromosomal replication initiator protein DnaA -
  MTX16_RS14460 dnaN 2820210..2821355 (+) 1146 WP_001212884.1 DNA polymerase III subunit beta -
  MTX16_RS14465 yaaA 2821483..2821695 (+) 213 WP_000821364.1 S4 domain-containing protein YaaA -
  MTX16_RS14470 recF 2821708..2822835 (+) 1128 WP_000470745.1 DNA replication/repair protein RecF Machinery gene
  MTX16_RS14475 gyrB 2822874..2824796 (+) 1923 WP_061457943.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  MTX16_RS14480 gyrA 2824885..2827356 (+) 2472 WP_001282864.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43362.67 Da        Isoelectric Point: 6.6001

>NTDB_id=670278 MTX16_RS14470 WP_000470745.1 2821708..2822835(+) (recF) [Bacillus thuringiensis strain LX43]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRE

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=670278 MTX16_RS14470 WP_000470745.1 2821708..2822835(+) (recF) [Bacillus thuringiensis strain LX43]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCGCAAGGGAAAACAAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGATTTTGGTCAAATAAAAGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAGCAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCGAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGAGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGACGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTGATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGTTGGATGATGTTTTATCA
GAATTAGATGATTATCGTCAATCACATCTTTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACTGTAGATTGTGAAATAGATA
GGGAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653