Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MTX16_RS08580 Genome accession   NZ_CP094624
Coordinates   1683891..1684637 (-) Length   248 a.a.
NCBI ID   WP_000487013.1    Uniprot ID   A0A9W5QDK4
Organism   Bacillus thuringiensis strain LX43     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1678891..1689637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTX16_RS08560 dnaG 1679652..1681448 (-) 1797 WP_000528221.1 DNA primase -
  MTX16_RS08565 - 1681530..1681673 (-) 144 WP_000479733.1 hypothetical protein -
  MTX16_RS08570 - 1682309..1683121 (-) 813 WP_000368944.1 pyruvate, water dikinase regulatory protein -
  MTX16_RS08575 - 1683151..1683783 (-) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  MTX16_RS08580 recO 1683891..1684637 (-) 747 WP_000487013.1 DNA repair protein RecO Machinery gene
  MTX16_RS08585 - 1684671..1684814 (-) 144 WP_000883924.1 YqzL family protein -
  MTX16_RS08590 era 1684991..1685896 (-) 906 WP_001080230.1 GTPase Era -
  MTX16_RS08595 - 1685889..1686287 (-) 399 WP_017673539.1 cytidine deaminase -
  MTX16_RS08600 - 1686387..1686740 (-) 354 WP_000715464.1 diacylglycerol kinase family protein -
  MTX16_RS08605 ybeY 1686737..1687207 (-) 471 WP_001050397.1 rRNA maturation RNase YbeY -
  MTX16_RS08610 - 1687204..1689348 (-) 2145 WP_017673538.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28609.20 Da        Isoelectric Point: 8.0488

>NTDB_id=670262 MTX16_RS08580 WP_000487013.1 1683891..1684637(-) (recO) [Bacillus thuringiensis strain LX43]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGQFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=670262 MTX16_RS08580 WP_000487013.1 1683891..1684637(-) (recO) [Bacillus thuringiensis strain LX43]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCAGTTTCTTATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAATTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTCAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCAGAGCAAGACCCATATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAATGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552