Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   MTO68_RS10700 Genome accession   NZ_CP094620
Coordinates   2288077..2288460 (+) Length   127 a.a.
NCBI ID   WP_004821236.1    Uniprot ID   A0AAX3PF86
Organism   Acinetobacter sp. NyZ410     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2283077..2293460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO68_RS10670 (MTO68_10670) kdsB 2283840..2284601 (+) 762 WP_004821225.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MTO68_RS10675 (MTO68_10675) - 2284667..2285647 (+) 981 WP_244015868.1 DNA polymerase III subunit delta' -
  MTO68_RS10680 (MTO68_10680) - 2285674..2286015 (+) 342 WP_004821228.1 PilZ domain-containing protein -
  MTO68_RS10685 (MTO68_10685) - 2286043..2286816 (+) 774 WP_004720827.1 TatD family hydrolase -
  MTO68_RS10690 (MTO68_10690) - 2286904..2287518 (+) 615 WP_004821232.1 TetR/AcrR family transcriptional regulator -
  MTO68_RS10695 (MTO68_10695) - 2287524..2288090 (+) 567 WP_004720822.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MTO68_RS10700 (MTO68_10700) xcpV 2288077..2288460 (+) 384 WP_004821236.1 type II secretion system minor pseudopilin GspI Machinery gene
  MTO68_RS10705 (MTO68_10705) xcpW 2288460..2289116 (+) 657 WP_081407352.1 type II secretion system minor pseudopilin GspJ Machinery gene
  MTO68_RS10710 (MTO68_10710) gspK 2289164..2290120 (+) 957 WP_244015869.1 type II secretion system minor pseudopilin GspK -
  MTO68_RS10715 (MTO68_10715) - 2290353..2290949 (+) 597 WP_244015870.1 6-carboxytetrahydropterin synthase -
  MTO68_RS10720 (MTO68_10720) ung 2291024..2291737 (+) 714 WP_004821244.1 uracil-DNA glycosylase -
  MTO68_RS10725 (MTO68_10725) - 2291734..2292855 (+) 1122 WP_034610216.1 enoyl-CoA hydratase/isomerase family protein -
  MTO68_RS10730 (MTO68_10730) tadA 2292862..2293386 (+) 525 WP_034610219.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14080.38 Da        Isoelectric Point: 10.0997

>NTDB_id=670231 MTO68_RS10700 WP_004821236.1 2288077..2288460(+) (xcpV) [Acinetobacter sp. NyZ410]
MKKNKGFTLIEVVVALAIFAVAAMALTKVAMQYTQSTANAILRTKAQFVAQNEISMMMINREWLSGTSSKQVTTQGETWQ
VDKKAESTLSPNVQKIDVQVSLFNPDTGKVEAGITNMVFFNYPIKEK

Nucleotide


Download         Length: 384 bp        

>NTDB_id=670231 MTO68_RS10700 WP_004821236.1 2288077..2288460(+) (xcpV) [Acinetobacter sp. NyZ410]
ATGAAGAAAAATAAAGGCTTTACTTTAATTGAGGTAGTTGTGGCTTTGGCGATTTTTGCAGTCGCAGCAATGGCTTTGAC
CAAAGTCGCGATGCAATATACGCAGTCGACAGCCAATGCGATTTTACGAACCAAGGCTCAGTTTGTTGCACAGAATGAAA
TCTCAATGATGATGATTAATCGTGAATGGCTGTCAGGAACGTCATCCAAACAAGTCACCACACAAGGTGAAACTTGGCAG
GTAGATAAAAAAGCAGAATCTACACTGAGCCCAAATGTACAAAAAATAGATGTGCAAGTGAGCCTTTTTAATCCTGATAC
GGGTAAAGTAGAAGCAGGGATTACCAATATGGTGTTCTTTAATTATCCGATCAAAGAAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Type II secretion system (T2SS), protein I (T2SSI)

(43-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

79.2

98.425

0.78