Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   MTO68_RS01730 Genome accession   NZ_CP094620
Coordinates   367877..368773 (+) Length   298 a.a.
NCBI ID   WP_244014767.1    Uniprot ID   -
Organism   Acinetobacter sp. NyZ410     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 362877..373773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO68_RS01705 (MTO68_01705) rpoZ 364631..364912 (-) 282 WP_004718302.1 DNA-directed RNA polymerase subunit omega -
  MTO68_RS01710 (MTO68_01710) gmk 365034..365654 (-) 621 WP_034617459.1 guanylate kinase -
  MTO68_RS01715 (MTO68_01715) ispH 365789..366739 (+) 951 WP_096732771.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  MTO68_RS01720 (MTO68_01720) - 366881..367363 (+) 483 WP_244014765.1 GspH/FimT family pseudopilin -
  MTO68_RS01725 (MTO68_01725) pilV 367360..367875 (+) 516 WP_004818639.1 type IV pilus modification protein PilV Machinery gene
  MTO68_RS01730 (MTO68_01730) pilW 367877..368773 (+) 897 WP_244014767.1 PilW family protein Machinery gene
  MTO68_RS01735 (MTO68_01735) - 368770..369576 (+) 807 WP_244014768.1 PilX N-terminal domain-containing pilus assembly protein -
  MTO68_RS01740 (MTO68_01740) - 369590..373516 (+) 3927 WP_244014770.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 32311.78 Da        Isoelectric Point: 8.3758

>NTDB_id=670221 MTO68_RS01730 WP_244014767.1 367877..368773(+) (pilW) [Acinetobacter sp. NyZ410]
MNYKLQNGFTLVELIVALALGLIISAAALQLFTGGLITTRLQQAGAELQDSGVFGLEYMAHDIRLANYGNTNNPELNDKT
NQGGVVLTSGATGNVNLPIALDTKFLTTAGGVSNVNAASDQLTILFIAPNKMFNCEGAEVAAGEYILQRYFLRKDDNGQN
DTDYALACDANTPPATSIAQIKGMGERSQIIMPRVDHLRFYLGTQNNNKTNLSYYSIDKYMSEAKTAAAANKKPPRVVSI
KVGVLVRSKDDTKSTLIDPTASINFLNEAVKLKNTSSKYLRREYTTTIALRNAMGEPL

Nucleotide


Download         Length: 897 bp        

>NTDB_id=670221 MTO68_RS01730 WP_244014767.1 367877..368773(+) (pilW) [Acinetobacter sp. NyZ410]
ATGAATTATAAATTACAAAACGGTTTTACCTTAGTTGAACTTATTGTTGCTTTGGCATTGGGATTAATCATTAGTGCTGC
TGCTCTACAACTATTTACAGGTGGCCTGATCACGACTCGCTTACAACAAGCAGGTGCTGAGTTGCAAGATAGTGGTGTTT
TTGGGTTGGAATATATGGCGCATGATATAAGACTTGCGAATTATGGGAACACAAATAATCCAGAGTTAAATGATAAAACA
AATCAAGGTGGTGTTGTTTTAACCAGTGGAGCAACTGGAAACGTTAATTTACCTATTGCTTTGGATACAAAGTTTTTAAC
GACTGCAGGTGGGGTGTCAAATGTAAATGCGGCAAGTGATCAATTAACAATTTTATTCATAGCACCAAATAAAATGTTTA
ATTGTGAAGGGGCTGAAGTTGCAGCAGGGGAATATATTCTTCAACGTTATTTTTTACGTAAGGATGATAATGGTCAGAAT
GATACAGACTATGCACTGGCTTGTGATGCAAATACACCACCAGCGACATCTATTGCTCAAATTAAGGGGATGGGTGAACG
TAGTCAAATCATCATGCCCCGTGTAGATCATTTAAGATTTTATTTAGGTACACAAAATAATAATAAAACAAATCTAAGCT
ATTACTCGATTGATAAATATATGAGTGAGGCCAAAACTGCAGCAGCTGCAAATAAAAAACCACCAAGAGTTGTCTCAATT
AAAGTTGGAGTACTAGTCCGTTCAAAAGATGATACGAAAAGTACGTTAATTGATCCTACAGCAAGTATAAATTTTTTAAA
TGAAGCGGTTAAGTTAAAAAATACAAGCAGCAAGTATTTAAGACGTGAATACACAACAACAATAGCATTAAGAAATGCGA
TGGGAGAGCCACTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)

Type IV Pilus-assembly protein W (PilW)

(149-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

48.923

100

0.534
  comB Acinetobacter baylyi ADP1

34.568

100

0.376