Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   MST18_RS14310 Genome accession   NZ_CP094555
Coordinates   3006212..3006538 (-) Length   108 a.a.
NCBI ID   WP_078190459.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12068_T     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3001212..3011538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST18_RS14290 (MST18_14275) - 3001334..3002083 (-) 750 WP_180132752.1 FHA domain-containing protein -
  MST18_RS14295 (MST18_14280) gspD 3002161..3004392 (-) 2232 WP_180132753.1 type II secretion system secretin GspD -
  MST18_RS14300 (MST18_14285) - 3004435..3005301 (-) 867 WP_180132754.1 type II secretion system protein N -
  MST18_RS14305 (MST18_14290) gspN 3005301..3006044 (-) 744 WP_168379021.1 type II secretion system protein N -
  MST18_RS14310 (MST18_14295) hns 3006212..3006538 (-) 327 WP_078190459.1 H-NS family nucleoid-associated regulatory protein Regulator
  MST18_RS14315 (MST18_14300) - 3006681..3007112 (-) 432 WP_180132755.1 thioesterase family protein -
  MST18_RS14320 (MST18_14305) - 3007122..3008315 (-) 1194 WP_180132756.1 heme biosynthesis protein HemY -
  MST18_RS14325 (MST18_14310) - 3008322..3009164 (-) 843 WP_180132757.1 hypothetical protein -
  MST18_RS14330 (MST18_14315) - 3009161..3009940 (-) 780 WP_180132758.1 uroporphyrinogen-III synthase -
  MST18_RS14335 (MST18_14320) hemC 3009944..3010861 (-) 918 WP_078193127.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12321.05 Da        Isoelectric Point: 5.3232

>NTDB_id=670187 MST18_RS14310 WP_078190459.1 3006212..3006538(-) (hns) [Acinetobacter sp. YH12068_T]
MMPDISNLSVEELKKLQVEAEALIASKKDQAIEDAYNRIVEIAENLDLSVEQILEFGSSKRKKSTRKAVEPRYRSKTNAD
DTWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=670187 MST18_RS14310 WP_078190459.1 3006212..3006538(-) (hns) [Acinetobacter sp. YH12068_T]
ATTATGCCTGATATTAGTAATTTATCAGTTGAAGAGTTAAAGAAGCTTCAAGTAGAAGCTGAAGCGCTGATTGCATCTAA
AAAAGATCAAGCGATTGAAGATGCGTACAACCGTATTGTTGAAATTGCAGAAAATTTAGATTTAAGCGTTGAACAAATCC
TTGAATTTGGTTCAAGCAAACGTAAAAAATCAACTCGTAAAGCGGTTGAACCACGTTACCGTAGCAAAACCAATGCAGAT
GACACTTGGACTGGTCGTGGTAAGCAACCACGTTGGTTAGTGGCTGAGTTAGAAAAAGGCGCGAAACTAGAAGACTTCTT
AATTTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

82.407

100

0.824