Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   MST18_RS13965 Genome accession   NZ_CP094555
Coordinates   2928670..2930892 (+) Length   740 a.a.
NCBI ID   WP_180132731.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12068_T     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2923670..2935892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST18_RS13940 (MST18_13925) lnt 2923988..2925547 (+) 1560 WP_180078073.1 apolipoprotein N-acyltransferase -
  MST18_RS13945 (MST18_13930) - 2925632..2925970 (-) 339 WP_180042366.1 tRNA-binding protein -
  MST18_RS13950 (MST18_13935) - 2926221..2926556 (-) 336 WP_180132730.1 hypothetical protein -
  MST18_RS13955 (MST18_13940) gspG 2926840..2927277 (-) 438 WP_078189784.1 type II secretion system major pseudopilin GspG -
  MST18_RS13960 (MST18_13945) gspF 2927314..2928519 (-) 1206 WP_180089615.1 type II secretion system inner membrane protein GspF -
  MST18_RS13965 (MST18_13950) priA 2928670..2930892 (+) 2223 WP_180132731.1 primosomal protein N' Machinery gene
  MST18_RS13970 (MST18_13955) - 2930972..2932813 (+) 1842 WP_180132732.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  MST18_RS13975 (MST18_13960) hslO 2932864..2933739 (+) 876 WP_111885623.1 Hsp33 family molecular chaperone HslO -
  MST18_RS13980 (MST18_13965) - 2933986..2934438 (+) 453 WP_180035003.1 DUF2147 domain-containing protein -
  MST18_RS13985 (MST18_13970) - 2934723..2935187 (+) 465 WP_180132733.1 DUF2147 domain-containing protein -
  MST18_RS13990 (MST18_13975) - 2935377..2935841 (+) 465 WP_168377965.1 DUF2147 domain-containing protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 83856.95 Da        Isoelectric Point: 8.8449

>NTDB_id=670186 MST18_RS13965 WP_180132731.1 2928670..2930892(+) (priA) [Acinetobacter sp. YH12068_T]
MANSASIATPIYRVRVAVPVYLYDCFDYSLNQEQYQQAEVGARVAVSFGRQNLTGIIVEKIAPDAPLDSSFKLKAITELL
DDRAILDEKVLNLLTWSAQYYQFPIGEVMQSALPTLLRQGKPYNLLARTWNLIDHNAEAKIKRSERQQEAYKILKLHPTG
TGENLLNLSGVETATLKALEKKGICECVLAEQDFSPMPMSMAQMPLTANPDQKKAIDSVLKVRKKYQAFLLDGLTGSGKT
EVYLQIMQEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCNIALLHSGLNDSKRMQAWQAAQTGKASIILGTRSAIYTPL
PNLGLIVIDEEHDLSFKQQEGFRYHARDVALYRGHLEQCPVILGSATPSIECYALAKQGKMTVLELNQRAGTAVMPKIHI
LDLKVAQKQHGISQLLIGEIRKRLEKKEQVLVFLNRRGYAPVLICESCAWQAKCPHCDANFTVHRTPYQHLHCHHCGTIH
RMPEHCPQCNHQELKSVGMGTAKVEESLNELFPQHDVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRAIERTAQLIVQVTGRAGRGERKGDVFLQTLRPDHPLLNILVNENYRKFAKETMKEREMAQM
PPFRYAALVRCESKNQELNTEFLQQHAQLLRQDSAGIIDIWGPIPAPMERKAGRYQSHMVLLSTDRARLHYYLRYWWQNI
LHNKPSNMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=670186 MST18_RS13965 WP_180132731.1 2928670..2930892(+) (priA) [Acinetobacter sp. YH12068_T]
ATGGCAAATTCAGCGAGCATTGCAACACCTATTTACCGCGTTCGAGTCGCCGTTCCGGTATATTTATACGACTGCTTCGA
TTACAGCTTAAACCAAGAGCAATACCAACAAGCTGAAGTAGGTGCACGCGTTGCTGTATCTTTTGGTCGGCAAAATTTGA
CCGGTATCATCGTGGAAAAAATTGCTCCCGATGCACCACTCGATTCAAGCTTTAAACTCAAGGCCATTACCGAACTTCTT
GATGATCGTGCCATTTTAGATGAGAAAGTTTTAAATTTATTGACATGGTCTGCACAGTATTACCAATTTCCGATTGGTGA
AGTGATGCAAAGTGCCCTTCCGACGCTGTTACGCCAAGGAAAGCCCTATAATTTATTGGCACGGACATGGAATCTGATTG
ACCATAATGCTGAAGCCAAAATTAAACGTTCAGAGCGTCAGCAAGAAGCGTATAAAATACTAAAATTACATCCCACAGGC
ACAGGTGAAAATCTTTTAAATTTGTCAGGTGTGGAAACAGCAACACTCAAAGCCTTAGAGAAAAAAGGCATCTGCGAATG
TGTGTTAGCAGAACAAGACTTTAGCCCGATGCCGATGAGCATGGCGCAAATGCCACTTACAGCAAACCCTGACCAAAAAA
AAGCGATCGATAGCGTATTAAAAGTCCGTAAAAAATATCAGGCCTTCCTGCTCGATGGCTTAACTGGCAGTGGTAAAACT
GAAGTCTATTTACAAATCATGCAAGAGGTTCTCAAGCAAGGCAAACAGGTCTTGGTTTTAGTTCCTGAGATTGGACTCAC
CCCACAGACAATTAGCCGCTTCCAATCACGTTTTCATTGCAATATTGCCCTATTACATTCGGGGTTAAACGATTCAAAAC
GTATGCAAGCTTGGCAAGCTGCGCAAACAGGTAAGGCGTCAATTATTTTAGGCACACGTTCTGCGATTTATACGCCACTG
CCTAATCTAGGTTTAATTGTGATTGATGAAGAGCATGATCTGTCCTTTAAACAACAAGAAGGCTTTCGCTATCACGCTCG
GGATGTCGCACTTTACCGTGGGCATCTGGAACAATGCCCTGTAATTTTAGGTTCTGCCACGCCTAGTATCGAGTGCTATG
CACTGGCGAAACAAGGCAAAATGACCGTACTGGAATTGAACCAACGTGCGGGCACCGCGGTCATGCCGAAAATACACATC
CTTGATTTGAAAGTGGCACAGAAACAGCATGGAATCAGCCAACTTTTGATTGGTGAAATCCGTAAACGGCTTGAAAAAAA
AGAGCAAGTATTGGTGTTTTTAAACCGCCGGGGTTATGCACCTGTACTGATTTGTGAAAGCTGTGCATGGCAGGCCAAAT
GCCCACATTGCGATGCCAATTTCACGGTTCATCGTACACCTTATCAACATTTACATTGTCATCACTGCGGCACCATTCAC
CGTATGCCAGAGCATTGTCCACAGTGTAATCACCAAGAACTGAAATCCGTGGGCATGGGCACAGCGAAGGTTGAAGAAAG
CCTGAATGAACTATTTCCGCAGCATGACGTTATAAGGGTCGATCGTGATTCCACCAGTCGCGTCGGCAGCTGGCAAAAAA
TCTATGACAAGATTCAAAAAAGCGAACCTGCCATTTTGCTTGGCACACAAATGCTGGCCAAAGGACATCATTTCCCTTAC
GTCACCTTAGTGGCGATTTTAGATATCGATTCAGGTCTGCTGAGTGTGGACTTCCGTGCCATCGAACGTACCGCTCAACT
CATTGTGCAAGTCACAGGGCGTGCCGGCCGTGGCGAACGTAAAGGCGATGTATTCCTACAAACATTAAGACCCGACCATC
CGCTTTTGAATATTTTGGTCAATGAGAACTACCGAAAATTTGCCAAAGAAACCATGAAAGAACGGGAAATGGCACAAATG
CCACCGTTTCGCTATGCCGCATTGGTACGCTGTGAGTCAAAAAACCAAGAACTCAATACTGAATTTTTACAGCAACATGC
CCAATTGCTGCGTCAGGACTCTGCTGGAATTATTGATATTTGGGGGCCGATTCCTGCCCCGATGGAGCGCAAAGCAGGGC
GTTACCAATCCCACATGGTTTTACTATCTACAGATCGTGCGCGCTTACATTATTATCTGCGTTATTGGTGGCAAAACATC
TTGCATAACAAGCCATCAAATATGAAATTGAGCCTCGATATAGACCCACAGGAACTCAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

DEAD/DEAH box helicase (DEAD)

(210-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.175

98.919

0.704