Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG826_RS29700 Genome accession   NZ_CP109041
Coordinates   6673826..6675559 (-) Length   577 a.a.
NCBI ID   WP_266758456.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00645     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6668826..6680559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG826_RS29690 (OG826_29705) - 6670410..6671702 (+) 1293 WP_266758460.1 RNA polymerase sigma factor -
  OG826_RS29695 (OG826_29710) rcrQ 6671898..6673826 (-) 1929 WP_266758458.1 ABC transporter ATP-binding protein Regulator
  OG826_RS29700 (OG826_29715) rcrP 6673826..6675559 (-) 1734 WP_266758456.1 ABC transporter ATP-binding protein Regulator
  OG826_RS29705 (OG826_29720) - 6675724..6677178 (-) 1455 WP_266758454.1 FGGY family carbohydrate kinase -
  OG826_RS29710 (OG826_29725) - 6677253..6677558 (-) 306 WP_266758452.1 YtxH domain-containing protein -
  OG826_RS29730 (OG826_29745) - 6678783..6679103 (+) 321 WP_266758450.1 hypothetical protein -
  OG826_RS29735 (OG826_29750) - 6679238..6679675 (-) 438 WP_266758448.1 hypothetical protein -
  OG826_RS29740 (OG826_29755) - 6680188..6680400 (-) 213 WP_266758446.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62601.00 Da        Isoelectric Point: 6.7681

>NTDB_id=670181 OG826_RS29700 WP_266758456.1 6673826..6675559(-) (rcrP) [Streptomyces sp. NBC_00645]
MLIRLLRTHLSPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIVISLAQVVCNIGAVFYGA
RTASAVGRDIRAAVFDRVQSFSAREMGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPTLGICVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDGYEKERFKGANTDLTETSLATGRMLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLATESSVVP
PVAPVLELRRHGHLEIRAAGFRYPGAEEPVLKSVDLVARPGEVTAVIGSTGSGKSTLLGMIPRLFDATDGQVLVDGVDVA
TIEPKLLARTVGLVPQKPYLFAGTVATNLRYGNPEATDEELWHALEVAQAKGFVERLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSAETSEATVVIVAQRVSTIREADRIVVLDEGRVVGSGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=670181 OG826_RS29700 WP_266758456.1 6673826..6675559(-) (rcrP) [Streptomyces sp. NBC_00645]
GTGCTCATACGACTCCTGCGGACCCACCTCAGTCCGTACAAGAAACCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACGCTGAACGCGCACATCATCGACAACGGTGTCGTGAAGGGGGACACGGGTTACA
TCCTGTCCTTCGGCGCCCTGATGATCGTCATCTCGCTGGCCCAGGTCGTCTGCAACATCGGCGCCGTCTTCTACGGCGCC
CGCACCGCCTCCGCGGTCGGCCGGGACATCCGGGCGGCCGTCTTCGACCGCGTCCAGTCCTTCTCGGCACGTGAGATGGG
CCACTTCGGCGCTCCGTCGCTCATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTGGCGCTGATGACGTTCA
CCCTGCTGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTCCTGGCCCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTCGTCGCCGTGGTGCCGACCCTCGGCATCTGCGTGACGCTCATCGTGCGCAGGCTGCGCCCGCTGTTCCGCACCATGCA
GGTGCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCGTTCGTGCGCGACG
GCTACGAGAAGGAGCGCTTCAAGGGCGCCAACACCGACCTCACCGAGACGTCGCTGGCCACCGGCCGGATGCTGGCCCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCCATCGCGGTGGTCTGGTTCGGCGCCCACCGCATCGACAGCGG
CGGCATGCAGATCGGCGATCTGACCGCGTTCCTCGCCTACCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCCAGGAGGTCCTGGCCACCGAGAGCAGCGTGGTCCCG
CCGGTCGCGCCCGTCCTGGAGCTGCGCCGTCACGGCCACCTGGAGATCCGCGCGGCCGGCTTCCGCTACCCGGGCGCCGA
GGAGCCGGTCCTGAAGTCCGTCGACCTCGTGGCGCGCCCCGGCGAGGTGACCGCGGTCATCGGGTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGCATGATCCCCCGCCTGTTCGACGCCACCGACGGCCAGGTGCTCGTCGACGGCGTGGACGTGGCG
ACCATCGAGCCGAAGCTGCTGGCCAGGACGGTCGGACTGGTCCCGCAGAAGCCGTACCTGTTCGCGGGGACGGTCGCCAC
CAACCTGCGGTACGGCAACCCGGAGGCGACCGACGAAGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGAGCGGCTGGAGAACGGGCTGGACTCACCGATCGCGCAGGGCGGGACGAATGTGTCCGGCGGCCAGCGGCAGCGTCTG
GCCATCGCCCGCACCCTCGTGCAGCGCCCCGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTCGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTGTCCGCGGAGACCTCCGAGGCGACCGTGGTGATCGTGGCCCAGCGGGTGTCGACCATCC
GGGAGGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTGGGCAGCGGACGGCACCACGAACTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.691

100

0.4