Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG826_RS29695 Genome accession   NZ_CP109041
Coordinates   6671898..6673826 (-) Length   642 a.a.
NCBI ID   WP_266758458.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00645     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6666898..6678826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG826_RS29685 (OG826_29700) dnaG 6668187..6670094 (+) 1908 WP_266758462.1 DNA primase -
  OG826_RS29690 (OG826_29705) - 6670410..6671702 (+) 1293 WP_266758460.1 RNA polymerase sigma factor -
  OG826_RS29695 (OG826_29710) rcrQ 6671898..6673826 (-) 1929 WP_266758458.1 ABC transporter ATP-binding protein Regulator
  OG826_RS29700 (OG826_29715) rcrP 6673826..6675559 (-) 1734 WP_266758456.1 ABC transporter ATP-binding protein Regulator
  OG826_RS29705 (OG826_29720) - 6675724..6677178 (-) 1455 WP_266758454.1 FGGY family carbohydrate kinase -
  OG826_RS29710 (OG826_29725) - 6677253..6677558 (-) 306 WP_266758452.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69156.36 Da        Isoelectric Point: 5.7000

>NTDB_id=670180 OG826_RS29695 WP_266758458.1 6671898..6673826(-) (rcrQ) [Streptomyces sp. NBC_00645]
MAGPMGRMMAGGGPDQRSMDFKGSGRRLLTQFKPERATLYVMLVAVVLSVGLSVVGPKILGRATDLVFAGIVGRQMPAGD
TKAQALDSLREHGQGGVADMLSGTDFTPGEGIDFNAVGNVLLIALGTFLLAGLLMAVATRLVNRAVNKTVYRMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDMDNIQQTLQQSMGQLVNSLLTIVGVLAMMFWVSPLLALVALVTVPLSFVVATRIGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHNLVKVFGRADESAAQFAEQNEKLYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFEVLDADEQEADPTVSARPGELRGRVALE
HVSFRYDAEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVTGGRITLDGVDVASMSRDELRAGIGMVLQDT
WLFGGTIADNIAYGASRDVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGAGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGSIVEQGAHAELLASGGAYARLYQAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=670180 OG826_RS29695 WP_266758458.1 6671898..6673826(-) (rcrQ) [Streptomyces sp. NBC_00645]
ATGGCCGGGCCGATGGGGCGGATGATGGCCGGGGGCGGCCCCGATCAGCGCTCGATGGATTTCAAGGGGTCGGGCAGACG
ACTGCTCACCCAGTTCAAGCCCGAGCGCGCCACGCTGTACGTGATGCTGGTCGCCGTCGTCCTGAGCGTGGGGCTCTCGG
TGGTCGGCCCGAAGATCCTGGGCAGGGCCACGGACCTGGTCTTCGCGGGGATCGTCGGACGCCAGATGCCGGCCGGCGAC
ACCAAGGCCCAGGCTCTCGACTCGCTGCGCGAGCACGGCCAGGGCGGCGTGGCCGACATGCTCTCGGGGACGGACTTCAC
CCCCGGCGAGGGCATCGACTTCAACGCCGTCGGGAACGTCCTGCTGATCGCGCTCGGCACGTTCCTGCTGGCCGGCCTGC
TGATGGCGGTGGCGACGCGCCTGGTGAACCGGGCCGTCAACAAGACCGTCTACCGCATGCGCGAGGACCTTCAGGCGAAG
CTGTCACGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTCCTCAGCCGTGCCACGAACGACATGGACAA
CATCCAGCAGACCCTCCAGCAGTCGATGGGCCAGCTCGTCAACTCGCTGCTGACCATCGTGGGCGTGCTCGCCATGATGT
TCTGGGTGTCACCGCTGCTCGCGCTCGTCGCGCTGGTCACGGTGCCGCTGTCGTTCGTCGTCGCCACCCGGATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGCCA
CAACCTGGTGAAGGTGTTCGGGCGGGCCGACGAGTCGGCGGCGCAGTTCGCCGAGCAGAACGAGAAGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGTGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTCGTGGCG
GTGGTCGGCGGTCTGCGCGTGGCTTCCGGCTCGCTGTCGATCGGTGATGTGCAGGCGTTCATCCAGTACTCCCGCCAGTT
CTCGATGCCACTGACGCAGGTCGCGTCGATGGCGAACCTTGTGCAGTCGGGTGTCGCGTCCGCGGAGCGGGTCTTCGAGG
TCCTCGACGCGGACGAGCAGGAGGCGGACCCGACGGTGTCGGCCCGTCCCGGCGAGCTGCGCGGGCGCGTGGCGCTGGAG
CACGTGTCCTTCCGGTACGACGCGGAGAAGCCGCTCATCGAGGACCTCTCGCTGAAGGTGGAGCCGGGCCACACGGTGGC
CATCGTCGGCCCGACCGGCGCCGGCAAGACGACCCTGGTGAACCTGCTCATGCGGTTCTACGACGTCACGGGCGGCCGGA
TCACCCTCGACGGGGTCGATGTGGCGTCCATGTCCCGGGACGAACTGAGGGCCGGGATAGGGATGGTGCTGCAGGACACC
TGGCTGTTCGGTGGCACGATCGCCGACAACATCGCGTACGGGGCCTCGCGGGACGTCACCCGCGGGGAGATCGAGGAGGC
GGCGCGCGCGGCGCACGCCGACCGCTTCATCCGTACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGGGCCG
GGGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAG
GCGACCAGCTCCGTCGACACCCGCACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGCCGGACCTCGTT
CGTGATCGCCCACCGTCTGTCGACGATCCGGGACGCGGACACCATCCTCGTGATGGAGGACGGGTCCATCGTGGAGCAGG
GCGCGCACGCGGAGCTGCTGGCGTCCGGCGGAGCCTACGCCCGCCTGTACCAGGCCCAGTTCGCCCAGGCGGTCGCCGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.55

96.885

0.383