Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   MST18_RS02390 Genome accession   NZ_CP094555
Coordinates   480487..481344 (+) Length   285 a.a.
NCBI ID   WP_213032932.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12068_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 475487..486344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST18_RS02365 (MST18_02365) wrbA 476128..476721 (+) 594 WP_078192437.1 NAD(P)H:quinone oxidoreductase -
  MST18_RS02370 (MST18_02370) - 477342..477740 (-) 399 WP_180010554.1 hypothetical protein -
  MST18_RS02375 (MST18_02375) - 478008..478583 (-) 576 WP_078189246.1 xanthine phosphoribosyltransferase -
  MST18_RS02380 (MST18_02380) - 478674..479387 (-) 714 WP_180010540.1 DUF3108 domain-containing protein -
  MST18_RS02385 (MST18_02385) - 479545..480228 (-) 684 WP_078192433.1 hypothetical protein -
  MST18_RS02390 (MST18_02390) tonB2 480487..481344 (+) 858 WP_213032932.1 energy transducer TonB Machinery gene
  MST18_RS02395 (MST18_02395) - 481345..481635 (-) 291 WP_180133487.1 antibiotic biosynthesis monooxygenase -
  MST18_RS02400 (MST18_02400) ybeY 481699..482181 (-) 483 WP_078192431.1 rRNA maturation RNase YbeY -
  MST18_RS02405 (MST18_02405) - 482191..483282 (-) 1092 WP_180103026.1 PhoH family protein -
  MST18_RS02410 (MST18_02410) miaB 483321..484778 (-) 1458 WP_180106954.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32592.13 Da        Isoelectric Point: 7.3203

>NTDB_id=670168 MST18_RS02390 WP_213032932.1 480487..481344(+) (tonB2) [Acinetobacter sp. YH12068_T]
MPLMKEWWKDPIFATALAFAAVLHLAFLTMQFSMPQEADYNTKEIAVSLRSTTEKIEHADFLAQADQQGSGTFRESHRMS
SDMPAPMIEQKAGEQKSEALEQLQQKKELSFEDKVLMTTLSWQKQAEENSRKKAVEELNSQFQAKAAMVASIEAQYLQRQ
QNFSRQQKIKTIDGIQAKQDVSAAYMEKFREKVEFYGNRYYPEAAKQQQLRGEVRLMVILNSNGGIRAIRLIESSGSSLL
DEAAKTSVRKAAPFGLFDAKMKDISELRIVRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=670168 MST18_RS02390 WP_213032932.1 480487..481344(+) (tonB2) [Acinetobacter sp. YH12068_T]
ATGCCCTTGATGAAAGAGTGGTGGAAAGATCCCATATTTGCAACTGCATTGGCGTTTGCTGCTGTGTTGCATTTGGCTTT
TTTAACCATGCAATTTTCCATGCCCCAAGAGGCGGATTATAACACCAAAGAAATTGCAGTTTCTTTACGTTCTACGACGG
AAAAAATTGAACATGCAGACTTTTTAGCACAAGCCGATCAGCAGGGCTCAGGGACATTCCGTGAGTCACATCGTATGTCG
AGTGACATGCCTGCACCGATGATCGAACAAAAAGCCGGGGAGCAAAAAAGCGAAGCTTTAGAACAACTGCAACAAAAGAA
AGAGCTGAGCTTTGAAGACAAAGTGTTGATGACAACCTTGAGTTGGCAAAAACAAGCGGAAGAAAACAGTCGCAAAAAAG
CCGTTGAGGAGTTGAATAGTCAGTTTCAGGCCAAGGCTGCGATGGTGGCGAGTATCGAAGCTCAATATTTACAACGCCAA
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACCATTGATGGTATTCAAGCCAAGCAAGATGTTTCTGCGGCCTATATGGA
AAAATTCCGCGAAAAAGTCGAGTTTTATGGCAACCGTTATTATCCTGAAGCGGCAAAACAGCAGCAGCTCCGCGGTGAAG
TACGCTTAATGGTTATTTTGAACAGTAATGGCGGGATTCGTGCCATTCGTTTGATCGAAAGTTCAGGTTCAAGCTTATTG
GATGAAGCAGCAAAAACCTCTGTGCGTAAGGCGGCACCTTTTGGTTTGTTTGATGCCAAAATGAAAGACATCTCAGAACT
TCGTATTGTACGTACTTGGCGCTTCGATCCTGCAGAAGCAGAGTTTGAGGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

72.043

97.895

0.705