Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   MST17_RS14785 Genome accession   NZ_CP094545
Coordinates   3042754..3043080 (-) Length   108 a.a.
NCBI ID   WP_180007248.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16056_T     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3037754..3048080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST17_RS14765 (MST17_14740) - 3037876..3038625 (-) 750 WP_180025945.1 FHA domain-containing protein -
  MST17_RS14770 (MST17_14745) gspD 3038703..3040934 (-) 2232 WP_180025944.1 type II secretion system secretin GspD -
  MST17_RS14775 (MST17_14750) - 3040977..3041843 (-) 867 WP_180025943.1 type II secretion system protein N -
  MST17_RS14780 (MST17_14755) gspN 3041843..3042586 (-) 744 WP_180012120.1 type II secretion system protein N -
  MST17_RS14785 (MST17_14760) hns 3042754..3043080 (-) 327 WP_180007248.1 H-NS family nucleoid-associated regulatory protein Regulator
  MST17_RS14790 (MST17_14765) - 3043223..3043654 (-) 432 WP_180025942.1 thioesterase family protein -
  MST17_RS14795 (MST17_14770) - 3043664..3044857 (-) 1194 WP_180025941.1 heme biosynthesis protein HemY -
  MST17_RS14800 (MST17_14775) - 3044864..3045706 (-) 843 WP_180025940.1 hypothetical protein -
  MST17_RS14805 (MST17_14780) - 3045703..3046482 (-) 780 WP_180025939.1 uroporphyrinogen-III synthase -
  MST17_RS14810 (MST17_14785) hemC 3046486..3047403 (-) 918 WP_218949166.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12347.13 Da        Isoelectric Point: 5.3232

>NTDB_id=670150 MST17_RS14785 WP_180007248.1 3042754..3043080(-) (hns) [Acinetobacter sp. YH16056_T]
MMPDISNLSVEELKKLQVEAEALIASKKDQAIEDAYNRIVEIAENLDLSVEQILEFGLSKRKKSTRKAVEPRYRSKTNAD
DTWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=670150 MST17_RS14785 WP_180007248.1 3042754..3043080(-) (hns) [Acinetobacter sp. YH16056_T]
ATTATGCCTGATATTAGTAATTTATCAGTTGAAGAGTTAAAGAAGCTTCAAGTAGAAGCTGAAGCACTGATTGCATCTAA
AAAAGATCAAGCGATTGAAGATGCGTATAACCGTATTGTTGAAATTGCAGAAAATTTAGATTTAAGCGTTGAACAAATTC
TTGAATTTGGTTTAAGCAAACGTAAAAAATCAACGCGTAAAGCGGTTGAGCCACGTTACCGTAGCAAAACCAATGCAGAT
GACACGTGGACTGGTCGTGGTAAACAACCACGTTGGTTAGTGGCTGAGTTAGAAAAAGGCGCGAAACTAGAAGACTTCTT
AATTTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

82.407

100

0.824