Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG826_RS13390 Genome accession   NZ_CP109041
Coordinates   2950212..2950988 (+) Length   258 a.a.
NCBI ID   WP_266763403.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00645     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2945212..2955988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG826_RS13380 (OG826_13390) - 2946083..2948980 (-) 2898 WP_266763405.1 vitamin B12-dependent ribonucleotide reductase -
  OG826_RS13385 (OG826_13395) nrdR 2949143..2949694 (-) 552 WP_266763404.1 transcriptional regulator NrdR -
  OG826_RS13390 (OG826_13400) dinR/lexA 2950212..2950988 (+) 777 WP_266763403.1 transcriptional repressor LexA Regulator
  OG826_RS13395 (OG826_13405) - 2951310..2953328 (-) 2019 WP_266763402.1 ATP-dependent DNA helicase -
  OG826_RS13400 (OG826_13410) - 2953417..2955513 (-) 2097 WP_406365342.1 IucA/IucC family protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27963.68 Da        Isoelectric Point: 7.4756

>NTDB_id=670134 OG826_RS13390 WP_266763403.1 2950212..2950988(+) (dinR/lexA) [Streptomyces sp. NBC_00645]
MTTTADSATITAQERSQGRLEPVHAMNEAANHEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYQPI
PGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=670134 OG826_RS13390 WP_266763403.1 2950212..2950988(+) (dinR/lexA) [Streptomyces sp. NBC_00645]
GTGACCACCACCGCAGACAGCGCCACCATCACTGCCCAGGAGCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCGCGAATCATGAGGGGCCCAAGCGCTCCCTGCCTGGCCGACCTCCAGGCATCCGGGCCGACAGCTCGGGACTCA
CGGACCGGCAGCGCCGGGTGATCGAGGTGATCCGGGACTCCGTGCAGCGGCGCGGCTACCCGCCGTCGATGCGGGAGATC
GGTCAGGCCGTCGGCCTTTCCAGCACCTCCTCGGTCGCGCATCAGCTCATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
AGACCCGCACCGCCCGCGCGCGTACGAGGTGCGAGGCTCCGACCAGTCGTCGGTGCAGCCCACGGACACGGCGGGCAAGC
CGGCCGCGTCCTATGTGCCGCTCGTCGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAATCGGTCGAGGACGTT
TTCCCTCTCCCCCGCCAGCTGGTCGGCGACGGAGAGCTGTTCGTCCTGAAGGTGGTCGGTGACTCGATGATCGAGGCCGC
CATCTGTGACGGGGACTGGGTGACGGTCCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTCGCCGCGATGCTCGACG
GCGAAGCCACGGTGAAGCGCTTCAAGCGCGAGGACGGACACGTGTGGCTGCTGCCGCACAACTCCGCGTACCAGCCGATC
CCCGGTGACGAGGCGACCATCCTCGGCAAGGTAGTGGCTGTGCTGCGTCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.714

81.395

0.372