Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   MST17_RS02450 Genome accession   NZ_CP094545
Coordinates   494345..495202 (+) Length   285 a.a.
NCBI ID   WP_213033255.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16056_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 489345..500202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST17_RS02420 (MST17_02420) wrbA 489989..490582 (+) 594 WP_180026043.1 NAD(P)H:quinone oxidoreductase -
  MST17_RS02425 (MST17_02425) - 490932..491087 (+) 156 WP_180026042.1 hypothetical protein -
  MST17_RS02430 (MST17_02430) - 491197..491595 (-) 399 WP_180026120.1 hypothetical protein -
  MST17_RS02435 (MST17_02435) - 491865..492440 (-) 576 WP_180010539.1 xanthine phosphoribosyltransferase -
  MST17_RS02440 (MST17_02440) - 492531..493244 (-) 714 WP_180010540.1 DUF3108 domain-containing protein -
  MST17_RS02445 (MST17_02445) - 493403..494086 (-) 684 WP_111885941.1 hypothetical protein -
  MST17_RS02450 (MST17_02450) tonB2 494345..495202 (+) 858 WP_213033255.1 energy transducer TonB Machinery gene
  MST17_RS02455 (MST17_02455) - 495206..495496 (-) 291 WP_180026041.1 antibiotic biosynthesis monooxygenase -
  MST17_RS02460 (MST17_02460) ybeY 495560..496042 (-) 483 WP_078192431.1 rRNA maturation RNase YbeY -
  MST17_RS02465 (MST17_02465) - 496052..497143 (-) 1092 WP_111885944.1 PhoH family protein -
  MST17_RS02470 (MST17_02470) miaB 497182..498639 (-) 1458 WP_180026040.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32616.19 Da        Isoelectric Point: 7.3203

>NTDB_id=670131 MST17_RS02450 WP_213033255.1 494345..495202(+) (tonB2) [Acinetobacter sp. YH16056_T]
MPLMKEWWKDPIFATALAFAAVLHLAFLTMQFTMPQEADYNTKEIAVSLRPTTEKIEHADFLAQADQQGSGTFRESHRMS
SDMPAPMIEQKAGEQKSEALEQLQQKKELSFEDKVLMTTLSWQKQAEENSRKKAVEELNSQFQAKAAMVASIEAQYLQRQ
QNFSRQQKIKTIDGIQAKQDVSAAYMEKFREKVEFYGNRYYPEAAKQQQLRGEVRLMVILNSNGGIRAIRLIESSGSSLL
DEAAKTSVRKAAPFGLFDAKMKDISELRIVRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=670131 MST17_RS02450 WP_213033255.1 494345..495202(+) (tonB2) [Acinetobacter sp. YH16056_T]
ATGCCCTTGATGAAAGAGTGGTGGAAAGATCCCATATTTGCAACTGCATTGGCGTTTGCTGCTGTGTTGCATTTGGCTTT
TTTAACCATGCAATTTACCATGCCCCAAGAGGCGGATTATAACACCAAAGAAATTGCAGTTTCTTTACGTCCTACGACGG
AAAAAATTGAACATGCGGACTTTTTAGCGCAAGCCGATCAGCAGGGCTCGGGGACATTCCGTGAGTCACATCGGATGTCG
AGTGACATGCCTGCACCGATGATCGAACAAAAAGCCGGTGAGCAAAAAAGTGAAGCTTTAGAGCAACTGCAACAAAAAAA
AGAGCTCAGTTTTGAAGATAAAGTGTTGATGACAACTTTGAGTTGGCAAAAACAAGCGGAAGAAAACAGTCGCAAAAAAG
CTGTTGAGGAGTTGAATAGTCAGTTTCAGGCCAAGGCTGCGATGGTGGCGAGTATCGAAGCTCAATATTTACAACGTCAG
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACCATAGATGGTATTCAAGCCAAGCAAGATGTTTCTGCGGCCTATATGGA
AAAGTTTCGTGAAAAAGTCGAGTTTTACGGTAACCGTTACTATCCTGAAGCGGCAAAACAGCAGCAGCTACGAGGTGAAG
TACGCTTAATGGTTATTTTGAACAGTAATGGCGGGATTCGTGCCATTCGTTTGATCGAAAGTTCAGGTTCAAGCTTATTG
GACGAAGCTGCAAAAACCTCTGTGCGTAAGGCGGCACCTTTTGGTTTGTTTGATGCCAAAATGAAAGACATCTCAGAACT
TCGTATTGTGCGGACTTGGCGCTTCGATCCTGCAGAAGCAGAGTTTGAGGTTCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

72.401

97.895

0.709