Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   MST17_RS01760 Genome accession   NZ_CP094545
Coordinates   371899..372810 (+) Length   303 a.a.
NCBI ID   WP_257223987.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16056_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 366899..377810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST17_RS01735 (MST17_01735) rpoZ 368643..368924 (-) 282 WP_067762989.1 DNA-directed RNA polymerase subunit omega -
  MST17_RS01740 (MST17_01740) gmk 369001..369624 (-) 624 WP_180026097.1 guanylate kinase -
  MST17_RS01745 (MST17_01745) ispH 369758..370708 (+) 951 WP_168378169.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  MST17_RS01750 (MST17_01750) - 370873..371382 (+) 510 WP_180026096.1 Tfp pilus assembly protein FimT/FimU -
  MST17_RS01755 (MST17_01755) pilV 371379..371897 (+) 519 WP_180026095.1 type IV pilus modification protein PilV Machinery gene
  MST17_RS01760 (MST17_01760) pilW 371899..372810 (+) 912 WP_257223987.1 PilW family protein Machinery gene
  MST17_RS01765 (MST17_01765) - 372794..373576 (+) 783 WP_180026094.1 pilus assembly PilX N-terminal domain-containing protein -
  MST17_RS01770 (MST17_01770) - 373594..377535 (+) 3942 WP_180026093.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 32922.72 Da        Isoelectric Point: 5.4595

>NTDB_id=670129 MST17_RS01760 WP_257223987.1 371899..372810(+) (pilW) [Acinetobacter sp. YH16056_T]
MYLNKMKLTHQKGFTLVELLIAIVIGLIVAAAALQLFLGGIISARMQEAGADLQDSGIFGVEYIARDVRLANYGNENNPI
LTNITPMGGIVLSSGETNANLLLKDVSADLLTKSGGTSSVGSKSDQLTIQFIAPNDMLNCEGVKVKANEYVIQRYFLRAD
GSASNLALACDANSAGSNEVSIAGLNDKNNGEIVMPRVDQLRFYLGSKIGEEFVYYTIDEYKKVAKDAVQPDIPRIVSIH
AMMLVRSKDSVSSKDLDPKTDSFKFLDGEVIATDKTTKYVRRMYATTIALRNGLGEKVYESAQ

Nucleotide


Download         Length: 912 bp        

>NTDB_id=670129 MST17_RS01760 WP_257223987.1 371899..372810(+) (pilW) [Acinetobacter sp. YH16056_T]
ATGTATTTAAATAAAATGAAGCTAACTCATCAAAAAGGATTCACCTTAGTCGAATTATTAATTGCAATTGTCATTGGACT
GATTGTCGCTGCTGCTGCTCTGCAATTATTTTTAGGTGGAATTATATCTGCACGTATGCAAGAAGCGGGTGCAGACTTGC
AAGATAGTGGTATTTTTGGGGTGGAATATATTGCTCGTGATGTGCGTTTAGCGAATTATGGAAATGAGAATAATCCAATT
TTAACAAATATAACTCCTATGGGGGGAATTGTGCTTAGTAGTGGTGAAACCAATGCTAATTTGCTCTTAAAGGATGTTAG
TGCTGATTTATTAACAAAATCTGGTGGTACTTCAAGTGTTGGCTCAAAAAGCGATCAGCTAACTATTCAATTTATAGCTC
CCAATGACATGCTTAATTGCGAAGGTGTGAAAGTGAAAGCTAATGAATATGTAATTCAACGATACTTTTTACGAGCTGAT
GGATCTGCTTCAAATTTGGCATTAGCGTGTGATGCTAATTCTGCTGGCAGTAATGAAGTATCTATAGCAGGTTTAAACGA
TAAAAATAATGGTGAAATAGTAATGCCTCGAGTAGATCAATTGAGGTTTTATTTGGGAAGTAAAATTGGGGAAGAATTTG
TTTATTACACAATTGATGAATACAAAAAGGTTGCAAAGGATGCGGTGCAACCTGATATTCCCCGCATTGTATCTATCCAT
GCCATGATGTTGGTACGTTCGAAAGATTCTGTGAGCAGTAAAGATCTAGACCCAAAAACTGATAGTTTTAAATTTTTAGA
TGGCGAAGTTATAGCTACAGATAAAACGACAAAATATGTACGACGCATGTATGCGACAACAATTGCTTTGCGAAATGGTT
TGGGGGAAAAAGTCTATGAAAGCGCCCAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-34)

Type IV Pilus-assembly protein W (PilW)

(155-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

45.427

100

0.492