Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   MST17_RS01755 Genome accession   NZ_CP094545
Coordinates   371379..371897 (+) Length   172 a.a.
NCBI ID   WP_180026095.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16056_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 366379..376897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST17_RS01735 (MST17_01735) rpoZ 368643..368924 (-) 282 WP_067762989.1 DNA-directed RNA polymerase subunit omega -
  MST17_RS01740 (MST17_01740) gmk 369001..369624 (-) 624 WP_180026097.1 guanylate kinase -
  MST17_RS01745 (MST17_01745) ispH 369758..370708 (+) 951 WP_168378169.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  MST17_RS01750 (MST17_01750) - 370873..371382 (+) 510 WP_180026096.1 Tfp pilus assembly protein FimT/FimU -
  MST17_RS01755 (MST17_01755) pilV 371379..371897 (+) 519 WP_180026095.1 type IV pilus modification protein PilV Machinery gene
  MST17_RS01760 (MST17_01760) pilW 371899..372810 (+) 912 WP_257223987.1 PilW family protein Machinery gene
  MST17_RS01765 (MST17_01765) - 372794..373576 (+) 783 WP_180026094.1 pilus assembly PilX N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18524.41 Da        Isoelectric Point: 7.9151

>NTDB_id=670128 MST17_RS01755 WP_180026095.1 371379..371897(+) (pilV) [Acinetobacter sp. YH16056_T]
MNKNKYQSGVGLVEVLVALILLAIGVLGYTALQLRAVDATSEALTRSQASLILRGLTENMRANPSAQASYPAAIKSYENS
VEPKPAPTCLDKPCSSADFAKYDAYLAAHAASNIGIKIVMAECPGVNAIKRQCLFAAWDETAINLKSTNYSNCMNDKGIY
IYGARCLMMEAY

Nucleotide


Download         Length: 519 bp        

>NTDB_id=670128 MST17_RS01755 WP_180026095.1 371379..371897(+) (pilV) [Acinetobacter sp. YH16056_T]
ATGAATAAAAATAAATATCAATCGGGTGTTGGGTTGGTTGAAGTTTTAGTCGCACTCATTCTACTTGCAATAGGAGTGCT
GGGTTATACAGCATTGCAATTACGTGCAGTAGATGCAACATCAGAAGCTCTTACACGTTCTCAAGCATCGTTAATTCTTA
GAGGGTTAACTGAGAACATGAGAGCTAATCCTAGTGCTCAAGCTAGTTATCCAGCAGCCATAAAGAGTTATGAAAATTCA
GTTGAACCAAAACCAGCACCAACATGTTTGGATAAACCTTGTTCATCTGCTGATTTTGCCAAATATGATGCATATTTGGC
AGCACATGCTGCCAGCAATATTGGAATTAAAATTGTTATGGCTGAATGTCCTGGTGTTAATGCAATTAAAAGACAATGCT
TATTTGCGGCATGGGATGAGACTGCAATAAATTTAAAAAGCACAAATTATAGTAACTGTATGAATGATAAGGGTATATAT
ATTTATGGTGCAAGATGTTTGATGATGGAGGCTTATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

52.222

100

0.547
  pilV Acinetobacter baylyi ADP1

40.556

100

0.424