Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   MST16_RS14275 Genome accession   NZ_CP094541
Coordinates   2909617..2910474 (-) Length   285 a.a.
NCBI ID   WP_218946155.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16040_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2904617..2915474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST16_RS14255 (MST16_14225) miaB 2906183..2907640 (+) 1458 WP_180010545.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  MST16_RS14260 (MST16_14230) - 2907679..2908770 (+) 1092 WP_180010544.1 PhoH family protein -
  MST16_RS14265 (MST16_14235) ybeY 2908780..2909262 (+) 483 WP_180010543.1 rRNA maturation RNase YbeY -
  MST16_RS14270 (MST16_14240) - 2909326..2909616 (+) 291 WP_180010542.1 antibiotic biosynthesis monooxygenase -
  MST16_RS14275 (MST16_14245) tonB2 2909617..2910474 (-) 858 WP_218946155.1 energy transducer TonB Machinery gene
  MST16_RS14280 (MST16_14250) - 2910733..2911416 (+) 684 WP_111885941.1 hypothetical protein -
  MST16_RS14285 (MST16_14255) - 2911575..2912288 (+) 714 WP_180010540.1 DUF3108 domain-containing protein -
  MST16_RS14290 (MST16_14260) - 2912379..2912954 (+) 576 WP_180010539.1 xanthine phosphoribosyltransferase -
  MST16_RS14295 (MST16_14265) - 2913222..2913620 (+) 399 WP_180010554.1 hypothetical protein -
  MST16_RS14300 (MST16_14270) wrbA 2914240..2914833 (-) 594 WP_180010538.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32649.18 Da        Isoelectric Point: 7.3203

>NTDB_id=670095 MST16_RS14275 WP_218946155.1 2909617..2910474(-) (tonB2) [Acinetobacter sp. YH16040_T]
MPLMKEWWKDPIFATALAFAAVLHLAFLTMQFSMPQEADYNTKEIAVSLRSTTEKIEHADFLAQTDQQGSGTFRESHRMS
SDMPAPMIEQKAGEQKSEALEQLQQKKELSFEDKVLMTTLSWQKQAEENSRKKAVEELNSQFQAKAAMVASIEAQYLQRQ
QNFSRQQKIKTIDGIQAKQDVSAAYMEKFREKVEFYGNRYYPEAAKQQQLRGEVRLMVILNSNGGIRAIRLIESSGSNLL
DEAAKTSVRKAAPFGLFDAKMKDISELRIVRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=670095 MST16_RS14275 WP_218946155.1 2909617..2910474(-) (tonB2) [Acinetobacter sp. YH16040_T]
ATGCCCTTGATGAAAGAGTGGTGGAAAGATCCCATATTTGCAACTGCATTGGCGTTTGCTGCTGTGTTGCATTTGGCTTT
TTTAACCATGCAATTTTCCATGCCCCAAGAGGCGGATTACAACACCAAAGAAATTGCAGTTTCTTTACGTTCTACGACGG
AAAAAATTGAACATGCAGACTTTTTAGCACAAACCGATCAGCAGGGCTCGGGGACATTCCGTGAGTCGCATCGTATGTCG
AGTGACATGCCTGCACCGATGATCGAACAAAAAGCCGGGGAGCAAAAAAGCGAAGCTTTAGAACAACTGCAACAAAAGAA
AGAGCTGAGCTTTGAAGACAAAGTGTTGATGACAACTTTGAGTTGGCAAAAACAAGCTGAAGAAAACAGTCGCAAAAAAG
CCGTTGAGGAGTTGAATAGTCAGTTTCAGGCCAAGGCTGCGATGGTGGCGAGTATCGAAGCTCAATATTTACAACGCCAG
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACCATTGATGGTATTCAAGCCAAGCAAGATGTTTCTGCTGCTTACATGGA
AAAATTTCGCGAAAAAGTCGAATTTTACGGTAACCGTTATTATCCTGAAGCAGCAAAACAGCAGCAGCTACGCGGTGAAG
TACGCTTAATGGTTATTTTGAACAGTAATGGCGGGATTCGTGCCATTCGTTTGATCGAAAGTTCAGGTTCAAACTTATTG
GACGAAGCTGCAAAAACCTCTGTACGTAAGGCGGCACCTTTTGGTTTGTTTGATGCCAAAATGAAAGACATCTCAGAACT
TCGTATTGTGCGTACTTGGCGCTTCGATCCTGCAGAAGCAGAGTTTGAGGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

71.685

97.895

0.702