Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   MST16_RS01730 Genome accession   NZ_CP094541
Coordinates   365606..367828 (-) Length   740 a.a.
NCBI ID   WP_180010248.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16040_T     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 360606..372828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST16_RS01705 (MST16_01705) - 360657..361121 (-) 465 WP_078192815.1 DUF2147 domain-containing protein -
  MST16_RS01710 (MST16_01710) - 361311..361775 (-) 465 WP_168377964.1 DUF2147 domain-containing protein -
  MST16_RS01715 (MST16_01715) - 362060..362512 (-) 453 WP_180010246.1 DUF2147 domain-containing protein -
  MST16_RS01720 (MST16_01720) hslO 362760..363635 (-) 876 WP_078189788.1 Hsp33 family molecular chaperone HslO -
  MST16_RS01725 (MST16_01725) - 363686..365527 (-) 1842 WP_180010247.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  MST16_RS01730 (MST16_01730) priA 365606..367828 (-) 2223 WP_180010248.1 primosomal protein N' Machinery gene
  MST16_RS01735 (MST16_01735) gspF 367979..369184 (+) 1206 WP_078189785.1 type II secretion system inner membrane protein GspF -
  MST16_RS01740 (MST16_01740) gspG 369221..369658 (+) 438 WP_078189784.1 type II secretion system major pseudopilin GspG -
  MST16_RS01745 (MST16_01745) - 369942..370277 (+) 336 WP_180010249.1 hypothetical protein -
  MST16_RS01750 (MST16_01750) - 370511..370849 (+) 339 WP_180010276.1 tRNA-binding protein -
  MST16_RS01755 (MST16_01755) lnt 370933..372492 (-) 1560 WP_180002894.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84028.13 Da        Isoelectric Point: 8.8418

>NTDB_id=670078 MST16_RS01730 WP_180010248.1 365606..367828(-) (priA) [Acinetobacter sp. YH16040_T]
MANSASISTPIYRVRVAVPVYLYDCFDYSLSQEQYQQAEVGVRVAVSFGRQNLTGIIVEKIAPDAPLDSRFKLKAITELL
DDRAILDEKVLNLLTWSAQYYQFPIGEVMQSALPTLLRQGKPYNLLARTWNLIDHNAEAKIKRSERQQEAYKILKLHPTG
TGENLLNLSGVETATLKALEKKGICQCVLAEQDFSPMPMSMAQMPLTANPEQKKAIDRVLKARNQYQAFLLDGLTGSGKT
EVYLQIMQEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCNIALLHSGLNDSKRMQAWQAAQTGKASIILGTRSAIYTPL
PNLGLIVIDEEHDLSFKQQEGFRYHARDVALYRGHLEQCPVILGSATPSIECYALAKQGKMTVLELNQRAGTAVMPKMHI
LDLKVAQKQYGISQLLIGEIRKRLEKKEQVLVFLNRRGYAPVLICESCAWQAKCPHCDANFTVHRTPYQHLHCHHCGTIH
RMPEHCPQCNHQELKSVGMGTAKVEESLNELFPQHDVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRAIERTAQLIVQVTGRAGRGERKGDVFLQTLRPDHPLLNILVNEDYRKFAKETMKEREMAQM
PPFRYAALVRCESKNQELNTEFLQQHAQLLRQDSAGIIDIWGPIPAPMERKAGRYQSHMVLLSTDRARLHYYLRYWWQNI
LHNKPSNMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=670078 MST16_RS01730 WP_180010248.1 365606..367828(-) (priA) [Acinetobacter sp. YH16040_T]
ATGGCAAATTCAGCGAGCATTTCAACACCTATTTACCGCGTTCGAGTCGCCGTTCCGGTATATTTATACGACTGCTTCGA
TTACAGCTTAAGCCAAGAGCAATACCAACAAGCTGAAGTAGGTGTACGCGTTGCTGTATCTTTTGGTCGGCAAAATTTGA
CCGGTATCATCGTGGAAAAAATTGCTCCCGATGCACCACTCGATTCAAGATTTAAACTCAAGGCCATTACCGAACTTCTT
GATGATCGTGCCATTTTAGATGAGAAAGTTTTAAATTTATTGACATGGTCTGCACAGTATTACCAATTTCCGATTGGTGA
AGTGATGCAAAGTGCCCTTCCGACGCTGTTACGCCAAGGAAAGCCCTATAATTTATTGGCACGGACATGGAATCTGATTG
ACCATAATGCTGAAGCCAAAATTAAACGTTCAGAGCGTCAACAAGAGGCGTATAAAATACTAAAATTACATCCCACAGGC
ACAGGTGAAAATCTTTTAAATTTGTCAGGTGTGGAAACCGCGACACTCAAAGCATTAGAGAAAAAAGGCATCTGCCAATG
TGTCTTGGCGGAACAGGACTTTAGCCCGATGCCCATGAGCATGGCGCAAATGCCACTCACTGCAAATCCTGAGCAAAAGA
AAGCCATTGATCGGGTGTTAAAGGCGCGTAATCAATATCAGGCATTTTTACTTGATGGTCTGACCGGCAGCGGTAAAACC
GAAGTCTATTTACAAATCATGCAAGAGGTTCTTAAGCAAGGCAAACAGGTCTTGGTTTTGGTACCTGAAATTGGACTCAC
CCCACAGACCATTAGCCGTTTCCAATCACGTTTTCATTGCAATATTGCCCTACTACATTCGGGGTTGAACGATTCAAAAC
GTATGCAAGCTTGGCAAGCGGCGCAAACGGGCAAGGCGTCTATTATCTTAGGCACGCGTTCTGCGATTTATACCCCACTG
CCGAATCTAGGTTTAATTGTGATTGATGAAGAGCATGATCTGTCCTTTAAACAACAAGAAGGCTTTCGCTATCACGCTCG
GGATGTCGCACTTTACCGTGGGCATCTGGAACAATGCCCTGTCATTTTAGGTTCTGCCACGCCTAGTATCGAGTGCTATG
CACTGGCGAAACAAGGCAAAATGACCGTACTGGAATTGAACCAACGTGCGGGCACTGCGGTCATGCCGAAAATGCACATC
CTTGATTTGAAAGTGGCACAGAAACAGTATGGAATCAGCCAACTTTTGATTGGTGAAATCCGTAAACGGCTTGAAAAAAA
AGAGCAAGTATTGGTGTTTTTAAACCGCCGGGGTTATGCACCTGTACTGATTTGTGAAAGTTGTGCATGGCAAGCTAAAT
GCCCACATTGTGATGCCAATTTCACGGTACACCGCACACCCTATCAACACCTACATTGTCACCACTGCGGCACCATTCAC
CGTATGCCAGAGCATTGTCCACAGTGTAATCACCAAGAACTGAAATCCGTGGGTATGGGTACAGCGAAGGTTGAAGAAAG
CCTAAATGAGCTATTTCCGCAGCATGACGTTATACGGGTCGATCGTGATTCCACCAGTCGGGTCGGCAGTTGGCAAAAAA
TCTATGACAAGATTCAAAAAAGCGAACCTGCCATTTTACTCGGTACACAAATGCTGGCCAAAGGACATCATTTCCCTTAC
GTCACCTTGGTGGCGATTTTAGATATCGATTCAGGTCTACTGAGTGTGGACTTCCGTGCCATCGAGCGTACTGCACAGCT
CATTGTACAAGTCACTGGGCGTGCCGGCCGTGGTGAACGTAAAGGCGATGTGTTTTTACAAACCCTAAGACCCGACCATC
CGCTTTTGAATATCTTGGTCAATGAGGACTATCGAAAATTTGCCAAAGAAACCATGAAAGAACGGGAAATGGCACAAATG
CCACCGTTTCGCTATGCCGCATTGGTGCGCTGTGAGTCCAAAAACCAAGAACTCAATACTGAATTTTTACAGCAACATGC
CCAATTGCTGCGTCAGGACTCTGCTGGAATTATTGACATTTGGGGGCCGATTCCTGCCCCGATGGAGCGCAAAGCGGGAC
GTTATCAATCCCACATGGTTTTACTGTCTACAGATCGTGCGCGCTTACATTATTATCTGCGTTATTGGTGGCAAAACATC
TTGCATAACAAGCCATCAAATATGAAATTGAGCCTCGATATAGACCCACAGGAACTCAGTTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(209-369)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.448

98.919

0.707