Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   MST16_RS01395 Genome accession   NZ_CP094541
Coordinates   287965..288291 (+) Length   108 a.a.
NCBI ID   WP_180007248.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16040_T     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 282965..293291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST16_RS01370 (MST16_01370) hemC 283642..284559 (+) 918 WP_218946203.1 hydroxymethylbilane synthase -
  MST16_RS01375 (MST16_01375) - 284563..285342 (+) 780 WP_180012126.1 uroporphyrinogen-III synthase -
  MST16_RS01380 (MST16_01380) - 285339..286181 (+) 843 WP_180012124.1 hypothetical protein -
  MST16_RS01385 (MST16_01385) - 286188..287381 (+) 1194 WP_180007025.1 heme biosynthesis protein HemY -
  MST16_RS01390 (MST16_01390) - 287391..287822 (+) 432 WP_180012122.1 thioesterase family protein -
  MST16_RS01395 (MST16_01395) hns 287965..288291 (+) 327 WP_180007248.1 H-NS family nucleoid-associated regulatory protein Regulator
  MST16_RS01400 (MST16_01400) gspN 288459..289202 (+) 744 WP_180012120.1 type II secretion system protein N -
  MST16_RS01405 (MST16_01405) - 289202..290068 (+) 867 WP_180012118.1 type II secretion system protein N -
  MST16_RS01410 (MST16_01410) gspD 290111..292342 (+) 2232 WP_180002842.1 type II secretion system secretin GspD -
  MST16_RS01415 (MST16_01415) - 292420..293169 (+) 750 WP_180012116.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12347.13 Da        Isoelectric Point: 5.3232

>NTDB_id=670077 MST16_RS01395 WP_180007248.1 287965..288291(+) (hns) [Acinetobacter sp. YH16040_T]
MMPDISNLSVEELKKLQVEAEALIASKKDQAIEDAYNRIVEIAENLDLSVEQILEFGLSKRKKSTRKAVEPRYRSKTNAD
DTWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=670077 MST16_RS01395 WP_180007248.1 287965..288291(+) (hns) [Acinetobacter sp. YH16040_T]
ATTATGCCTGATATTAGTAATTTATCAGTTGAAGAGTTAAAGAAGCTTCAAGTAGAAGCTGAAGCACTGATTGCATCTAA
AAAAGATCAAGCGATTGAAGATGCGTATAACCGTATTGTTGAAATTGCAGAAAATTTAGATTTAAGCGTTGAACAAATTC
TTGAATTTGGTTTAAGCAAACGTAAAAAATCAACGCGTAAAGCGGTTGAGCCACGTTACCGTAGCAAAACCAATGCAGAT
GACACGTGGACTGGTCGTGGTAAACAACCACGTTGGTTAGTGGCTGAGTTAGAAAAAGGCGCGAAACTAGAAGACTTCTT
AATTTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

82.407

100

0.824