Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MTP16_RS05610 Genome accession   NZ_CP094534
Coordinates   1321839..1323236 (-) Length   465 a.a.
NCBI ID   WP_243516637.1    Uniprot ID   -
Organism   Hymenobacter monticola strain KACC 22596     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1316839..1328236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP16_RS05585 (MTP16_05585) - 1316873..1317679 (+) 807 WP_243516631.1 inositol monophosphatase family protein -
  MTP16_RS05590 (MTP16_05590) - 1317809..1318030 (+) 222 WP_243516633.1 hypothetical protein -
  MTP16_RS05595 (MTP16_05595) - 1318154..1318495 (+) 342 WP_243516634.1 hypothetical protein -
  MTP16_RS05600 (MTP16_05600) - 1318591..1319610 (-) 1020 WP_243516635.1 SPASM domain-containing protein -
  MTP16_RS05605 (MTP16_05605) - 1319765..1321384 (-) 1620 WP_243516636.1 TlpA disulfide reductase family protein -
  MTP16_RS05610 (MTP16_05610) radA 1321839..1323236 (-) 1398 WP_243516637.1 DNA repair protein RadA Machinery gene
  MTP16_RS05615 (MTP16_05615) - 1323503..1324237 (-) 735 WP_243516638.1 hypothetical protein -
  MTP16_RS05620 (MTP16_05620) - 1324574..1325971 (+) 1398 WP_243516639.1 sensor histidine kinase -
  MTP16_RS05625 (MTP16_05625) - 1326123..1327781 (+) 1659 WP_243516640.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 50022.48 Da        Isoelectric Point: 6.0863

>NTDB_id=670069 MTP16_RS05610 WP_243516637.1 1321839..1323236(-) (radA) [Hymenobacter monticola strain KACC 22596]
MAKARTVFFCQSCGAQSAKWIGRCPVCGEWNTYVEEVVQKETAATTTGQWKPASTVPGGNLAKAAKPVALGDILVEDEPR
IITPDGELNRVLGGGLVPGSMVLIGGEPGIGKSTLMLQIALSLRNLKVLYVSGEESEAQIKMRAERMAEGRQSGCYILTE
TNTQNIFRQIDQVQPNILVVDSIQTMHSTLVESGAGSVSQVRECTAEFLKFAKETSTPVLLIGHITKDGSIAGPKILEHM
VDTVLQFEGDRHLSYRILRTTKNRFGSTSELGIYEMQGDGLRQVSNPSEILLSQRGESLSGMAIGATLEGNRPLLVEVQA
LVTPATYGTPQRSSTGFDAKRLQMLLAVLEKRAGLRLGQSDVFLNIAGGLRLDDPALDLAVCAAVVSSLNDLPIPGHVAL
AAEVGLSGEIRAVSRLDQRLAEAEKLGFREMYVSQFNGKGLDLARFGMKVQPVSRLDEVLNGLFG

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=670069 MTP16_RS05610 WP_243516637.1 1321839..1323236(-) (radA) [Hymenobacter monticola strain KACC 22596]
ATGGCCAAAGCCAGAACCGTCTTTTTCTGCCAGTCCTGCGGCGCCCAATCGGCCAAGTGGATAGGCCGATGCCCCGTGTG
CGGCGAGTGGAATACCTACGTGGAGGAGGTCGTCCAGAAGGAAACCGCCGCTACCACCACCGGCCAGTGGAAGCCCGCCA
GCACCGTGCCCGGCGGCAACCTGGCCAAGGCCGCCAAACCCGTGGCCCTCGGCGATATTCTGGTAGAAGACGAGCCCCGC
ATCATCACCCCCGACGGCGAGCTGAACCGCGTGCTCGGCGGCGGCCTCGTGCCGGGCTCCATGGTGCTCATCGGCGGCGA
GCCGGGCATTGGCAAGAGCACGCTCATGCTCCAAATTGCCCTCAGCCTGCGCAACCTGAAGGTGCTCTACGTGAGCGGCG
AAGAAAGCGAAGCCCAGATAAAAATGCGCGCCGAGCGCATGGCCGAGGGCCGGCAGTCGGGCTGCTACATCCTCACTGAA
ACGAACACCCAGAACATCTTCCGCCAAATCGACCAGGTGCAGCCCAACATCTTGGTGGTCGATTCCATCCAGACCATGCA
CTCCACGCTGGTGGAAAGCGGCGCCGGCAGCGTGAGCCAGGTGCGCGAGTGCACCGCCGAGTTCCTCAAATTCGCCAAGG
AAACCAGCACACCCGTGCTGCTCATCGGCCACATCACGAAGGACGGCAGCATTGCCGGCCCCAAAATCCTGGAGCACATG
GTCGATACGGTGCTGCAGTTCGAGGGCGACCGGCACCTGAGCTACCGCATCCTGCGCACCACCAAAAACCGCTTCGGCAG
CACTTCCGAGCTGGGCATCTACGAGATGCAGGGCGACGGCCTGCGCCAGGTGAGCAACCCGAGCGAAATCCTGCTCTCGC
AGCGCGGCGAAAGCCTGAGCGGCATGGCCATTGGCGCCACGCTGGAGGGCAACCGCCCCCTGCTGGTGGAAGTGCAGGCC
CTCGTGACGCCCGCCACCTACGGCACCCCGCAGCGCAGCAGCACCGGCTTCGACGCCAAGCGCCTGCAAATGCTGCTGGC
GGTGCTCGAAAAGCGCGCCGGCCTGCGCCTGGGCCAGTCCGACGTGTTTCTGAACATCGCCGGCGGCCTGCGCTTGGATG
ACCCGGCCCTCGACCTGGCCGTGTGCGCCGCCGTCGTCTCCTCCCTGAATGACCTGCCCATTCCCGGCCACGTGGCCTTG
GCCGCCGAGGTGGGTTTGAGCGGCGAAATCCGCGCCGTGAGCCGCCTCGACCAGCGTCTGGCCGAAGCCGAGAAGCTGGG
TTTCCGCGAGATGTACGTGTCGCAGTTCAACGGCAAGGGCCTCGACCTGGCCCGCTTTGGTATGAAAGTTCAGCCCGTGA
GCCGCCTTGACGAGGTGTTGAACGGGCTGTTTGGCTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(368-462)

AAA domain (AAA_25)

(81-229)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.465

100

0.497
  radA Streptococcus pneumoniae Rx1

47.974

100

0.484
  radA Streptococcus pneumoniae D39

47.974

100

0.484
  radA Streptococcus pneumoniae R6

47.974

100

0.484
  radA Streptococcus pneumoniae TIGR4

47.974

100

0.484
  radA Streptococcus mitis NCTC 12261

47.761

100

0.482
  radA Streptococcus mitis SK321

47.761

100

0.482