Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MTP09_RS14325 Genome accession   NZ_CP094532
Coordinates   3025745..3026848 (+) Length   367 a.a.
NCBI ID   WP_243549395.1    Uniprot ID   -
Organism   Chryseobacterium suipulveris strain SC2-2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3020745..3031848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP09_RS14310 (MTP09_14310) - 3022630..3023541 (-) 912 Protein_2833 DUF3078 domain-containing protein -
  MTP09_RS14315 (MTP09_14315) - 3023643..3024752 (-) 1110 WP_243549384.1 DUF3078 domain-containing protein -
  MTP09_RS14320 (MTP09_14320) - 3024904..3025692 (+) 789 WP_243549393.1 rhomboid family intramembrane serine protease -
  MTP09_RS14325 (MTP09_14325) dprA 3025745..3026848 (+) 1104 WP_243549395.1 DNA-processing protein DprA Machinery gene
  MTP09_RS14330 (MTP09_14330) gdhA 3027033..3028391 (+) 1359 WP_243549397.1 NADP-specific glutamate dehydrogenase -
  MTP09_RS14335 (MTP09_14335) - 3028569..3028835 (-) 267 WP_243549399.1 hypothetical protein -
  MTP09_RS14340 (MTP09_14340) - 3028939..3029427 (-) 489 WP_243549401.1 YkgJ family cysteine cluster protein -
  MTP09_RS14345 (MTP09_14345) prfA 3029469..3030554 (-) 1086 WP_243549403.1 peptide chain release factor 1 -
  MTP09_RS14350 (MTP09_14350) - 3030684..3031295 (+) 612 WP_243549405.1 YdeI family protein -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 40627.87 Da        Isoelectric Point: 8.1467

>NTDB_id=670058 MTP09_RS14325 WP_243549395.1 3025745..3026848(+) (dprA) [Chryseobacterium suipulveris strain SC2-2]
MFSEETLYSVALRHCPLVGDIIFRKLVLEVGSAKQVWELSKTGLKDIYGIGKKISAEIGKAEHLHFAEKELKFCEKHNIK
INLRHLGDLPKLLHECDDAPAILYQKGELDSSRNSLSIVGTRNITSYGKSFIHDFLPELKKKNIVTVSGLALGVDTVVHE
VSLENKIPTIAVLAHGFHTLYPSKNKRLSEKIIAEGGTLLTEFNSSQKPDRENFIQRNRVIAGLSPATIVVETGFGGGSI
STATFASNYNRDVFALPGKITDKYSQGCNQLILQNKAGIISSISSLVEQLGYQKEKTGELFPTSEIRLQLSDNQELIYKT
LDRSTPQSLDDIALKLDLPTFKILPELLQLEILGLVKALSGRQYLAL

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=670058 MTP09_RS14325 WP_243549395.1 3025745..3026848(+) (dprA) [Chryseobacterium suipulveris strain SC2-2]
ATGTTTTCTGAAGAGACTCTCTATTCCGTCGCGCTTCGCCATTGTCCGTTAGTTGGCGATATTATTTTCCGCAAATTAGT
GTTGGAAGTGGGTTCAGCGAAACAGGTATGGGAACTTTCAAAAACCGGATTGAAAGACATTTATGGAATCGGCAAGAAAA
TTTCCGCAGAAATTGGGAAAGCCGAACATTTACATTTTGCCGAAAAAGAGCTGAAGTTTTGTGAAAAACACAATATCAAA
ATCAATCTCCGCCATCTCGGCGATTTGCCAAAATTATTACATGAATGCGATGATGCTCCTGCAATTCTTTACCAAAAAGG
TGAACTGGATTCTTCGCGAAATTCCCTGAGCATCGTAGGTACGAGAAACATCACTTCTTACGGAAAATCTTTCATCCATG
ATTTTTTGCCTGAGCTAAAAAAGAAAAATATCGTCACAGTAAGTGGACTTGCTTTAGGTGTAGATACTGTGGTACACGAA
GTTTCTTTAGAAAATAAGATTCCGACCATTGCGGTTTTAGCGCATGGATTTCACACCCTTTATCCGTCAAAAAACAAGCG
GCTTTCAGAAAAAATTATTGCAGAAGGCGGAACTTTGCTGACCGAATTCAATTCATCCCAAAAACCCGACCGAGAAAATT
TTATTCAAAGAAACAGGGTGATTGCCGGTTTGTCTCCGGCAACGATTGTCGTGGAAACAGGTTTCGGTGGCGGATCGATC
AGCACGGCAACTTTTGCCAGCAACTACAACCGCGACGTTTTTGCGTTGCCGGGGAAAATTACCGACAAATACAGCCAAGG
TTGCAACCAACTGATTTTACAAAATAAAGCAGGAATCATCTCATCCATTTCATCGCTTGTGGAACAGCTTGGCTATCAAA
AAGAAAAAACCGGCGAACTCTTCCCTACCTCCGAAATCCGATTGCAATTATCTGACAATCAAGAATTAATCTATAAAACA
TTAGACAGAAGCACACCACAATCTTTAGATGATATTGCTTTGAAGCTCGACCTCCCCACTTTCAAAATTTTGCCTGAACT
GCTTCAGTTAGAAATTTTGGGACTGGTGAAAGCACTTTCGGGGAGACAATATCTCGCACTCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)

DprA winged helix domain (DprA_WH)

(309-361)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.749

98.91

0.561