Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG788_RS16310 Genome accession   NZ_CP109040
Coordinates   3707962..3709890 (+) Length   642 a.a.
NCBI ID   WP_406371605.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00647     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3702962..3714890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG788_RS16295 (OG788_16325) - 3704229..3704534 (+) 306 WP_351539040.1 YtxH domain-containing protein -
  OG788_RS16300 (OG788_16330) - 3704609..3706063 (+) 1455 WP_356758716.1 FGGY family carbohydrate kinase -
  OG788_RS16305 (OG788_16335) rcrP 3706229..3707962 (+) 1734 WP_406371603.1 ABC transporter ATP-binding protein Regulator
  OG788_RS16310 (OG788_16340) rcrQ 3707962..3709890 (+) 1929 WP_406371605.1 ABC transporter ATP-binding protein Regulator
  OG788_RS16315 (OG788_16345) - 3710047..3711339 (-) 1293 WP_406371607.1 RNA polymerase sigma factor -
  OG788_RS16320 (OG788_16350) dnaG 3711622..3713526 (-) 1905 WP_406371609.1 DNA primase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69207.41 Da        Isoelectric Point: 5.6820

>NTDB_id=670057 OG788_RS16310 WP_406371605.1 3707962..3709890(+) (rcrQ) [Streptomyces sp. NBC_00647]
MAGPMGRMMAGGGPDQRSMDFKGSGRRLLTQFKPERATLYVMLVAVVLSVGLSVVGPKILGRATDLVFAGIVGRQMPAGD
TKAEALDSLREHGQGGVADMLSGTDFTPGEGIDFNAVGNVLLLALGTFLLAGLLMAVATRLVNRAVNKTVYRMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDMDNIQQTLQQSMGQLVNSLLTIVGVLAMMFWVSPLLALVALVTVPLSFVVATRIGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHNLVKVFGRADESAAQFAEQNEKLYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFEVLDADEQEADPKVSAHPGELRGRVALE
HVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVTGGRITLDGVDVASMSRDELRAGIGMVLQDT
WLFGGTIADNIAYGASRDVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGSIVEQGAHAELLASGGAYARLYQAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=670057 OG788_RS16310 WP_406371605.1 3707962..3709890(+) (rcrQ) [Streptomyces sp. NBC_00647]
ATGGCCGGGCCGATGGGGCGGATGATGGCCGGGGGCGGCCCCGATCAGCGCTCGATGGATTTCAAGGGGTCGGGCAGACG
ACTGCTCACCCAGTTCAAGCCCGAGCGCGCCACGCTGTACGTGATGCTGGTCGCCGTCGTCCTGAGCGTGGGGCTCTCGG
TGGTCGGCCCGAAGATCCTGGGCAGGGCCACGGACCTGGTCTTCGCGGGGATCGTCGGACGCCAGATGCCGGCCGGCGAC
ACCAAGGCCGAGGCCCTGGACTCGCTGCGCGAGCACGGCCAGGGCGGCGTCGCCGACATGCTCTCGGGGACGGACTTCAC
CCCCGGCGAGGGCATCGACTTCAACGCCGTCGGGAACGTCCTGCTGCTCGCGCTCGGCACGTTCCTGCTGGCCGGACTTC
TGATGGCGGTGGCGACACGCCTGGTGAACCGGGCCGTCAACAAGACCGTGTACCGCATGCGCGAGGACCTTCAGGCGAAG
CTGTCACGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTCCTCAGCCGCGCCACGAACGACATGGACAA
CATCCAGCAGACCCTCCAGCAGTCGATGGGCCAGCTCGTCAACTCGCTGCTGACCATCGTGGGTGTGCTCGCGATGATGT
TCTGGGTGTCGCCGCTGCTCGCGCTCGTCGCGCTGGTCACGGTGCCGCTGTCGTTCGTCGTGGCCACCCGGATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGCCA
CAACCTGGTGAAGGTGTTCGGGCGGGCGGACGAATCGGCGGCGCAGTTCGCCGAGCAGAACGAGAAGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGTGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTCGTGGCG
GTGGTCGGCGGTCTGCGCGTGGCCTCCGGCTCGCTGTCGATCGGTGATGTTCAGGCGTTCATCCAGTACTCCCGCCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCGTCGGCGGAGCGGGTCTTCGAGG
TCCTCGACGCGGACGAGCAGGAGGCGGACCCGAAGGTGTCGGCCCATCCCGGCGAGCTGCGCGGGCGCGTGGCGCTGGAG
CACGTGTCCTTCCGGTACGACCCTGAGAAGCCGCTCATCGAGGATCTCTCGCTGAAGGTGGAGCCGGGCCACACGGTGGC
CATCGTCGGCCCGACCGGCGCCGGCAAGACGACCCTGGTGAACCTGCTCATGCGGTTCTACGACGTCACGGGCGGCCGGA
TCACCCTCGACGGGGTCGATGTGGCGTCCATGTCCCGGGACGAGCTGAGGGCCGGGATAGGGATGGTGCTGCAGGACACC
TGGCTGTTCGGGGGCACGATCGCCGACAACATCGCGTACGGGGCCTCGCGGGACGTCACCCGCGGGGAGATCGAGGAGGC
GGCGCGCGCGGCGCACGCCGACCGCTTCATCCGTACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGATCGG
GGGTCAGCGCGGGCGAGAAGCAGCTGATCACGATCGCCCGGGCGTTCCTGTCGGATCCGGTGATCCTGGTGCTCGACGAG
GCGACCAGCTCCGTGGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGCCGGACCTCGTT
CGTGATCGCCCACCGTCTGTCGACGATCCGGGACGCGGACACCATCCTCGTGATGGAGGACGGGTCCATCGTGGAGCAGG
GCGCGCACGCGGAGCTGCTGGCGTCCGGCGGGGCCTACGCCCGCCTGTACCAGGCCCAGTTCGCCCAGGCGGTGGCCGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.968

96.262

0.385