Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG788_RS16305 Genome accession   NZ_CP109040
Coordinates   3706229..3707962 (+) Length   577 a.a.
NCBI ID   WP_406371603.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00647     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3701229..3712962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG788_RS16275 (OG788_16305) - 3701844..3702857 (+) 1014 WP_406371601.1 carbohydrate kinase -
  OG788_RS16295 (OG788_16325) - 3704229..3704534 (+) 306 WP_351539040.1 YtxH domain-containing protein -
  OG788_RS16300 (OG788_16330) - 3704609..3706063 (+) 1455 WP_356758716.1 FGGY family carbohydrate kinase -
  OG788_RS16305 (OG788_16335) rcrP 3706229..3707962 (+) 1734 WP_406371603.1 ABC transporter ATP-binding protein Regulator
  OG788_RS16310 (OG788_16340) rcrQ 3707962..3709890 (+) 1929 WP_406371605.1 ABC transporter ATP-binding protein Regulator
  OG788_RS16315 (OG788_16345) - 3710047..3711339 (-) 1293 WP_406371607.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62548.83 Da        Isoelectric Point: 6.4228

>NTDB_id=670056 OG788_RS16305 WP_406371603.1 3706229..3707962(+) (rcrP) [Streptomyces sp. NBC_00647]
MLIRLLRTHLSPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGAVMIGISLAQVVCNIGAVFYGA
RTASAVGRDIRAAVFDRVQSFSAREMGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPTLGICVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDGYEKERFKGANTDLTETSLATGRMLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGQMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLATESSVVP
PVAPVLELRRHGHLEIRAAGFRYPGAEEPVLKSVDLVASPGEVTAVIGSTGSGKSTLLGMIPRLFDATDGQVLVDGVDVA
TIEPKLLARTVGLVPQKPYLFAGTVATNLRYGNPEATDEELWHALEVAQAKGFVEQLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSTETSEATVVIVAQRVSTIREADRIVVLDEGRVVGSGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=670056 OG788_RS16305 WP_406371603.1 3706229..3707962(+) (rcrP) [Streptomyces sp. NBC_00647]
GTGCTCATACGACTCCTGCGGACCCACCTCAGTCCGTACAAGAAACCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACGCTGAACGCGCACATCATCGACAACGGTGTCGTAAAGGGGGACACGGGTTACA
TCCTGTCCTTCGGCGCTGTGATGATCGGCATCTCGCTGGCCCAGGTCGTCTGCAACATCGGCGCCGTCTTCTACGGCGCC
CGCACGGCCTCCGCGGTCGGCCGGGACATCCGGGCGGCCGTCTTCGACCGCGTCCAGTCCTTCTCGGCACGTGAGATGGG
CCACTTCGGCGCTCCGTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCCCTGATGACGTTCA
CCCTGCTGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTCCTGGCCCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTCGTCGCCGTGGTGCCGACCCTCGGCATCTGCGTGACCCTCATCGTGCGCAGGCTGCGCCCGCTGTTCCGCACCATGCA
GGTGCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCTTTCGTGCGCGACG
GCTACGAGAAGGAGCGCTTCAAGGGCGCCAACACCGACCTCACCGAGACGTCGCTGGCCACGGGCCGGATGCTGGCCCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCCATCGCGGTCGTCTGGTTCGGCGCCCATCGCATCGACAGCGG
CCAGATGCAGATCGGCGATCTGACCGCGTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGCCACCGAGAGCAGTGTGGTCCCG
CCGGTCGCGCCCGTCCTGGAGCTGCGCCGTCACGGCCACCTGGAGATCCGCGCGGCCGGCTTCCGCTACCCGGGCGCCGA
GGAGCCGGTCCTGAAGTCCGTCGACCTCGTGGCGAGTCCCGGCGAGGTGACCGCGGTCATCGGGTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGCATGATCCCCCGCCTGTTCGACGCCACCGACGGCCAGGTGCTGGTCGACGGCGTGGATGTGGCG
ACCATCGAGCCGAAGCTGCTGGCCAGGACGGTCGGGCTGGTCCCGCAGAAGCCGTATCTGTTCGCGGGGACGGTCGCCAC
GAACCTGCGGTACGGCAACCCGGAGGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGGTTCG
TGGAGCAGCTGGAGAACGGTCTGGACTCGCCGATCGCGCAGGGCGGGACGAATGTGTCCGGCGGCCAGCGGCAGCGTCTG
GCCATCGCCCGCACCCTCGTGCAGCGCCCCGAGATCTATCTCTTCGACGACTCCTTCTCGGCCCTCGACTACGCGACGGA
CGCGGCGCTGCGCGCTGCGCTGTCCACGGAGACCTCCGAGGCGACCGTGGTGATCGTGGCCCAGCGCGTGTCGACCATCC
GGGAGGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTGGGCAGCGGACGGCACCACGAACTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.519

100

0.399