NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	MTP09_RS02075	Genome accession	NZ_CP094532
Coordinates	431531..432877 (-)	Length	448 a.a.
NCBI ID	WP_243550177.1	Uniprot ID	-
Organism	Chryseobacterium suipulveris strain SC2-2
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 426531..437877

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MTP09_RS02045 (MTP09_02045)	-	426710..427861 (-)	1152	WP_243550167.1	hypothetical protein	-
MTP09_RS02050 (MTP09_02050)	-	427942..428460 (+)	519	WP_243550169.1	NAD(P)H-dependent oxidoreductase	-
MTP09_RS02055 (MTP09_02055)	-	428460..430298 (+)	1839	WP_243551563.1	monovalent cation:proton antiporter-2 (CPA2) family protein	-
MTP09_RS02060 (MTP09_02060)	-	430318..430896 (-)	579	WP_243550171.1	ACP phosphodiesterase	-
MTP09_RS02065 (MTP09_02065)	-	430900..431238 (-)	339	WP_243550173.1	type II toxin-antitoxin system PemK/MazF family toxin	-
MTP09_RS02070 (MTP09_02070)	-	431222..431458 (-)	237	WP_243550175.1	hypothetical protein	-
MTP09_RS02075 (MTP09_02075)	radA	431531..432877 (-)	1347	WP_243550177.1	DNA repair protein RadA	Machinery gene
MTP09_RS02080 (MTP09_02080)	-	433057..433584 (-)	528	WP_243550179.1	YceI family protein	-
MTP09_RS02085 (MTP09_02085)	-	433817..435424 (+)	1608	WP_243550181.1	CTP synthase	-
MTP09_RS14495	-	435484..435753 (+)	270	WP_396022236.1	DUF4160 domain-containing protein	-
MTP09_RS02090 (MTP09_02090)	-	435750..436004 (+)	255	WP_243550182.1	DUF2442 domain-containing protein	-

Sequence

Protein

Download Length: 448 a.a. Molecular weight: 49684.36 Da Isoelectric Point: 6.6089

                                >NTDB_id=670046 MTP09_RS02075 WP_243550177.1 431531..432877(-) (radA) [Chryseobacterium suipulveris strain SC2-2]

MAKLKTAYFCQNCGTQYPQWLGQCKNCGQWNTLVEEIVEKSPSKSFSDKGKQHIINIIEVETNEEPRIKTPSEELNRVLG

GGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKILYVSGEESASQIKMRADRLTELQNPNCFLFTETSVEKILHETKKLK

PDFIIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKFAKETNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNHL

FRLLRANKNRFGSTAEIGIYEMISQGLKEIKNPSEILITKKSEELSGNSVAVTLEGNRPMLIEIQALVSTAVYGTPQRSC

TGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHFCFAGEIGLSGEIRPVP

QIEQRISEAEKLGYEKIFISNLNKIPKRKFGITIVEVSKIEDFHEFLF

Nucleotide

Download Length: 1347 bp

                                >NTDB_id=670046 MTP09_RS02075 WP_243550177.1 431531..432877(-) (radA) [Chryseobacterium suipulveris strain SC2-2]

TTGGCAAAACTAAAAACAGCATATTTCTGTCAGAACTGCGGAACGCAATATCCGCAATGGCTTGGTCAATGCAAAAACTG

CGGACAGTGGAATACTTTGGTGGAAGAAATCGTAGAAAAATCTCCGTCGAAAAGTTTTTCGGATAAAGGCAAGCAGCACA

TCATCAACATTATCGAAGTTGAAACCAATGAGGAACCGCGGATTAAAACCCCTTCCGAAGAACTGAACCGCGTTCTCGGT

GGTGGAATTGTTTTGGGCTCTGTTACCTTGATTGGCGGTGAACCTGGAATCGGCAAATCCACGCTTCTTCTTCAGTTAGC

ATTAAAAATGAAGAAGAAAATCCTGTATGTTTCCGGTGAAGAAAGCGCGTCGCAAATCAAGATGAGAGCCGACCGGTTAA

CGGAATTGCAAAACCCAAACTGCTTCCTCTTTACCGAAACTTCTGTTGAGAAAATCCTTCACGAAACCAAAAAACTGAAA

CCCGATTTCATCATTATCGACTCCATTCAGACTTTACAAAGCCAGCTGATAGAAAGCTCACCCGGAACCGTTTCGCAAAT

CCGTGAATGCTCCAACGAAATTATCAAGTTCGCGAAAGAAACAAACACTCCGGTTTTTCTTGTCGGTCACATCACTAAAG

ATGGACAAATCGCAGGTCCAAAAGTTTTAGAACACATGGTAGATGTCGTACTCAACTTCGATGGCGACCGAAATCACCTT

TTCCGATTGTTGCGCGCCAACAAAAACCGTTTCGGCTCTACTGCAGAAATCGGGATTTACGAGATGATTTCGCAGGGTTT

GAAGGAAATCAAGAATCCATCCGAAATCCTCATTACCAAGAAATCCGAGGAACTCTCCGGGAATTCAGTCGCCGTAACCC

TCGAAGGAAACCGACCGATGCTGATTGAAATTCAGGCATTGGTTTCCACCGCGGTTTATGGAACGCCACAAAGAAGCTGT

ACCGGTTTCGACTCCAAACGGCTGAATATGCTTCTCGCCGTTTTAGAAAAAAGAGCAGGATTTCAATTGGGTGCAAAAGA

CGTTTTCCTGAACATTACCGGCGGAATCAAAACCGATGATCCCGCACTGGATTTGGCGGTGGTCGCATCAATTCTTTCCT

CAAATGAAGACATTGCCATTTCTGAACATTTCTGTTTTGCCGGCGAAATTGGTTTGAGTGGTGAAATTCGTCCGGTTCCT

CAAATCGAACAGCGAATCTCTGAAGCCGAAAAGTTGGGCTACGAAAAGATCTTTATTTCCAACCTCAACAAAATCCCTAA

GAGAAAATTCGGCATCACTATCGTTGAAGTGAGCAAAATTGAAGATTTTCACGAATTTCTGTTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(337-421)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-216)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.558	100	0.5
radA	Streptococcus pneumoniae Rx1	50	94.643	0.473
radA	Streptococcus pneumoniae D39	50	94.643	0.473
radA	Streptococcus pneumoniae R6	50	94.643	0.473
radA	Streptococcus pneumoniae TIGR4	50	94.643	0.473
radA	Streptococcus mitis SK321	50	94.643	0.473
radA	Streptococcus mitis NCTC 12261	50	94.643	0.473

Detailed information NTG0670046