Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG788_RS07965 Genome accession   NZ_CP109040
Coordinates   1810625..1810849 (+) Length   74 a.a.
NCBI ID   WP_406369750.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00647     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1805625..1815849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG788_RS07950 (OG788_07970) - 1805877..1809590 (-) 3714 WP_406369745.1 tetratricopeptide repeat protein -
  OG788_RS07955 (OG788_07975) - 1809759..1809881 (+) 123 WP_406369747.1 hypothetical protein -
  OG788_RS07960 (OG788_07980) - 1810246..1810578 (-) 333 WP_406369749.1 DUF6233 domain-containing protein -
  OG788_RS07965 (OG788_07985) dinR/lexA 1810625..1810849 (+) 225 WP_406369750.1 hypothetical protein Regulator
  OG788_RS07970 (OG788_07995) - 1811427..1811937 (-) 511 Protein_1590 leucine zipper domain-containing protein -
  OG788_RS07975 (OG788_08000) - 1812350..1812547 (-) 198 WP_406369751.1 hypothetical protein -
  OG788_RS07980 (OG788_08005) - 1812788..1813741 (-) 954 WP_406376703.1 ROK family protein -
  OG788_RS07985 (OG788_08010) - 1813980..1815062 (+) 1083 WP_406369753.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 74 a.a.        Molecular weight: 8450.70 Da        Isoelectric Point: 10.5684

>NTDB_id=670043 OG788_RS07965 WP_406369750.1 1810625..1810849(+) (dinR/lexA) [Streptomyces sp. NBC_00647]
MARHRVDYLTDVQEHILRTIRESIVDRGEAPTVVEIGAAVGMTSRSSVHYQLRELETKGAIVREPRRPRGIRLT

Nucleotide


Download         Length: 225 bp        

>NTDB_id=670043 OG788_RS07965 WP_406369750.1 1810625..1810849(+) (dinR/lexA) [Streptomyces sp. NBC_00647]
ATGGCCAGACACAGGGTCGACTACCTCACCGACGTCCAAGAGCACATCCTCCGCACCATCCGCGAATCCATCGTCGACCG
CGGCGAAGCACCCACGGTCGTCGAGATCGGCGCGGCGGTCGGAATGACCAGCCGCAGCTCAGTGCACTATCAGCTCCGTG
AATTGGAGACGAAAGGCGCCATCGTCCGAGAGCCGCGTCGGCCGCGCGGGATCCGGCTGACGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(9-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

47.692

87.838

0.419