Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MTP08_RS01215 Genome accession   NZ_CP094529
Coordinates   268159..269508 (-) Length   449 a.a.
NCBI ID   WP_243576732.1    Uniprot ID   -
Organism   Chryseobacterium oryzae strain ADR-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 263159..274508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP08_RS01195 (MTP08_01195) - 264669..265247 (-) 579 WP_243576728.1 HupE/UreJ family protein -
  MTP08_RS01200 (MTP08_01200) - 265325..265825 (+) 501 WP_243576729.1 DUF6702 family protein -
  MTP08_RS01205 (MTP08_01205) - 265829..266422 (-) 594 WP_243576730.1 ACP phosphodiesterase -
  MTP08_RS01210 (MTP08_01210) - 266505..268046 (-) 1542 WP_243576731.1 zinc-dependent metalloprotease -
  MTP08_RS01215 (MTP08_01215) radA 268159..269508 (-) 1350 WP_243576732.1 DNA repair protein RadA Machinery gene
  MTP08_RS01220 (MTP08_01220) - 269709..270767 (-) 1059 WP_243576733.1 2,3-butanediol dehydrogenase -
  MTP08_RS01225 (MTP08_01225) - 271002..271571 (+) 570 WP_243576734.1 YceI family protein -
  MTP08_RS01230 (MTP08_01230) - 271707..273314 (+) 1608 WP_243576735.1 CTP synthase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49793.41 Da        Isoelectric Point: 6.5082

>NTDB_id=670029 MTP08_RS01215 WP_243576732.1 268159..269508(-) (radA) [Chryseobacterium oryzae strain ADR-1]
MAKLKTAYFCQNCGSQYPQWSGQCKNCGEWNTLVEEIVEKTSSKTPPFSKSKQHVINIIEVEAVEEPRIKTPSDELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLAEIKNPNCFLFTETNLEKILHEAKKL
EPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNVPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSSAVYGTPQRS
CTGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEQFCFAGEIGLSGEIRPV
AQVEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKVEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=670029 MTP08_RS01215 WP_243576732.1 268159..269508(-) (radA) [Chryseobacterium oryzae strain ADR-1]
ATGGCAAAACTTAAAACAGCATATTTCTGTCAGAATTGTGGTTCGCAATATCCGCAATGGTCGGGGCAATGCAAAAACTG
CGGAGAATGGAATACTTTAGTGGAAGAAATTGTAGAAAAAACCTCATCCAAAACTCCCCCATTTTCCAAATCGAAGCAGC
ATGTTATTAACATTATCGAAGTTGAAGCAGTAGAAGAACCTAGAATAAAAACTCCTTCCGATGAGCTCAACCGTGTTCTA
GGAGGCGGAATTGTTCTTGGATCGGTTACTTTAATCGGCGGCGAACCAGGAATTGGGAAATCTACCCTTTTATTGCAGCT
TGCACTCAAAATGAAGAAAAAAATATTCTATGTTTCGGGAGAAGAAAGTGCTTCGCAAATAAAAATGAGAGCAGACCGTT
TGGCAGAAATTAAAAATCCCAACTGTTTTCTTTTTACGGAAACCAATCTTGAAAAAATTCTGCATGAAGCCAAAAAACTG
GAGCCTGATTTTGTCATTATCGACTCTATACAAACCTTACAGTCCCAATTAATTGAAAGTTCACCCGGAACAGTTTCACA
AATCCGAGAATGCTCCAACGAAATTATTAAATACGCCAAAGAAAACAATGTCCCTGTATTTCTGGTTGGTCACATCACCA
AAGACGGTCAAATTGCCGGTCCGAAAGTTTTAGAACACATGGTAGACGTAGTTCTGAACTTCGATGGCGACAGAAACCAT
CTTTTCAGACTGTTAAGAGCTAATAAAAACCGTTTCGGATCTACCTCGGAAATTGGTATTTACGAAATGATTTCTCAAGG
TCTGAAAGAAATAAAAAATCCTTCTGAAATTTTAATCACCAAAAAATTTGAAGAACTTTCCGGAAATTCGGTTGCGGTAA
CTTTAGAAGGAAACAGACCGATGCTGCTAGAAATTCAGGCTTTGGTAAGCAGTGCCGTTTACGGAACTCCGCAAAGAAGC
TGCACAGGTTTCGATTCTAAAAGGCTTAATATGCTTCTTGCAGTTCTGGAAAAGAGAGCAGGCTTTCAATTGGGTGCAAA
AGATGTATTCTTAAACATTACCGGAGGTATAAAAACAGACGATCCCGCATTAGATTTAGCAGTTGTAGCATCCATTTTAT
CGAGCAATGAAGATATTGCTATTTCCGAACAGTTCTGTTTTGCCGGAGAAATTGGGCTAAGCGGAGAAATTCGTCCTGTG
GCTCAGGTAGAACAAAGAATTACAGAAGCTGAAAAATTAGGCTATGAAAAAATTTTTGTGTCTAACCTTAATAAAATTCC
TAAAAGAAAATTCGGAATTAAGATTGAAGAAGTAAGCAAAGTGGAAGATTTTCACGAAAGACTTTTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(61-217)

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.336

100

0.497
  radA Streptococcus pneumoniae Rx1

47.845

100

0.494
  radA Streptococcus pneumoniae D39

47.845

100

0.494
  radA Streptococcus pneumoniae R6

47.845

100

0.494
  radA Streptococcus pneumoniae TIGR4

47.845

100

0.494
  radA Streptococcus mitis NCTC 12261

47.845

100

0.494
  radA Streptococcus mitis SK321

49.884

95.991

0.479