Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MTO98_RS31630 Genome accession   NZ_CP094527
Coordinates   7565102..7566571 (-) Length   489 a.a.
NCBI ID   WP_243483394.1    Uniprot ID   -
Organism   Mucilaginibacter sp. SMC90     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7560102..7571571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO98_RS31610 (MTO98_31610) - 7560486..7561022 (-) 537 WP_243483386.1 AAA family ATPase -
  MTO98_RS31615 (MTO98_31615) - 7561343..7562650 (-) 1308 WP_243483388.1 M28 family metallopeptidase -
  MTO98_RS31620 (MTO98_31620) - 7562653..7564527 (-) 1875 WP_243483390.1 M61 family metallopeptidase -
  MTO98_RS31625 (MTO98_31625) - 7564679..7564960 (+) 282 WP_243483392.1 hypothetical protein -
  MTO98_RS31630 (MTO98_31630) radA 7565102..7566571 (-) 1470 WP_243483394.1 DNA repair protein RadA Machinery gene
  MTO98_RS31635 (MTO98_31635) - 7567053..7569347 (-) 2295 WP_243483396.1 hypothetical protein -
  MTO98_RS31640 (MTO98_31640) - 7569277..7570302 (-) 1026 WP_243483398.1 hypothetical protein -
  MTO98_RS31645 (MTO98_31645) - 7570479..7570826 (+) 348 WP_243483399.1 hypothetical protein -

Sequence

Protein


Download         Length: 489 a.a.        Molecular weight: 53205.02 Da        Isoelectric Point: 6.3518

>NTDB_id=670015 MTO98_RS31630 WP_243483394.1 7565102..7566571(-) (radA) [Mucilaginibacter sp. SMC90]
MAKSKIAYFCQSCGFESPKWLGKCPSCQQWNTFVEEVIEKGNASVPAWKPASTSQQRANKPVAVTEITYTEEHRVPTPDK
EFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALNMPNQKVLYVSGEESERQIKMRAERLAAPPPPEGGADSGNHTGLT
GIAAPPSGGGACYVLTETSTQNIFKQIESLEPDLVVIDSIQTLHSAHIESTPGSVSQVRECTAELLRFAKETSTPVFLIG
HITKDGMIAGPKILEHMVDTVLQFEGDRHHVYRILRTIKNRFGSASELGIYEMMGEGLREVSNPSEILLSHRETPLSGIT
ISATLEGMRPMLIETQALVSASAYGTPQRTATGFDTKRMSMLLAVLEKRCGFRLGAKDVFLNITGGIRVEDPAIDLGLAA
AIISSHEDMPIPFKTCFAGELGLSGEIRAVNRVEQRIAEAQKLGFNQIFISKYNLPASGQDKKRMDLSRYDIDIKIVSSI
EEVFGQLFG

Nucleotide


Download         Length: 1470 bp        

>NTDB_id=670015 MTO98_RS31630 WP_243483394.1 7565102..7566571(-) (radA) [Mucilaginibacter sp. SMC90]
ATGGCTAAATCCAAGATCGCGTACTTTTGTCAAAGCTGTGGCTTTGAATCGCCCAAATGGCTGGGTAAATGCCCGTCATG
TCAGCAATGGAACACTTTTGTTGAAGAGGTGATTGAAAAAGGCAATGCATCGGTACCGGCCTGGAAACCTGCGTCAACGA
GTCAGCAGCGGGCCAACAAGCCTGTTGCTGTAACGGAGATCACTTATACTGAGGAGCATCGCGTACCAACTCCCGATAAG
GAGTTTAACCGCGTTTTGGGTGGTGGTATTGTACCCGGTTCGCTGGTACTTATTGGCGGAGAGCCGGGCATAGGCAAATC
AACGCTGATGTTACAGCTTGCACTCAATATGCCTAATCAAAAGGTGCTGTACGTATCGGGCGAGGAAAGCGAACGGCAGA
TCAAGATGCGGGCCGAAAGGTTAGCGGCCCCTCCGCCCCCTGAAGGGGGTGCTGATAGCGGCAACCATACAGGGCTAACC
GGAATAGCAGCTCCCCCTTCAGGGGGCGGCGCATGTTATGTATTAACCGAAACTTCAACCCAAAACATATTTAAACAGAT
AGAATCGCTGGAACCTGATTTGGTGGTGATCGATTCTATCCAAACCTTACATTCGGCTCACATAGAATCAACACCCGGCA
GCGTATCGCAGGTTAGGGAATGTACCGCCGAATTGCTTCGCTTTGCCAAGGAAACCTCGACACCGGTATTTTTGATAGGC
CATATCACCAAAGATGGCATGATTGCCGGCCCCAAAATATTGGAGCACATGGTTGATACTGTATTGCAGTTTGAGGGCGA
CAGGCACCATGTTTACCGGATACTGCGTACCATCAAAAACCGTTTCGGTTCAGCGTCTGAACTGGGTATTTATGAAATGA
TGGGCGAAGGGTTGAGAGAGGTATCCAACCCTTCGGAAATACTGCTCTCGCACCGCGAAACACCGCTGAGCGGTATCACC
ATTTCGGCCACTTTAGAGGGTATGCGCCCAATGCTGATTGAAACGCAGGCTTTGGTTAGTGCATCGGCATATGGAACCCC
GCAGCGTACTGCTACCGGTTTTGACACCAAACGCATGAGCATGCTGCTGGCTGTATTGGAAAAACGCTGCGGTTTCAGGC
TTGGCGCAAAAGATGTGTTTCTGAATATTACAGGCGGTATCAGGGTTGAAGACCCCGCTATTGATCTTGGTTTGGCGGCT
GCCATAATATCGTCGCACGAGGATATGCCTATTCCGTTCAAGACCTGTTTTGCAGGGGAGCTCGGGCTTTCGGGCGAGAT
CAGGGCTGTGAACCGCGTTGAACAGCGCATTGCCGAAGCGCAAAAGCTTGGCTTTAACCAGATCTTTATCTCTAAATATA
ACCTCCCGGCCAGCGGTCAGGATAAAAAACGAATGGACCTTTCACGCTACGATATCGACATAAAAATTGTAAGCAGTATT
GAAGAGGTGTTTGGACAATTGTTTGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(367-454)

AAA domain (AAA_25)

(68-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.516

93.456

0.491
  radA Streptococcus mitis NCTC 12261

48.163

100

0.483
  radA Streptococcus pneumoniae Rx1

48.163

100

0.483
  radA Streptococcus pneumoniae D39

48.163

100

0.483
  radA Streptococcus pneumoniae R6

48.163

100

0.483
  radA Streptococcus pneumoniae TIGR4

48.163

100

0.483
  radA Streptococcus mitis SK321

47.959

100

0.481