Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OIE42_RS22860 Genome accession   NZ_CP109038
Coordinates   5173718..5175451 (-) Length   577 a.a.
NCBI ID   WP_406344674.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00648     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5168718..5180451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE42_RS22850 (OIE42_22835) - 5170517..5171749 (+) 1233 WP_406344670.1 RNA polymerase sigma factor -
  OIE42_RS22855 (OIE42_22840) rcrQ 5171790..5173721 (-) 1932 WP_406344672.1 ABC transporter ATP-binding protein Regulator
  OIE42_RS22860 (OIE42_22845) rcrP 5173718..5175451 (-) 1734 WP_406344674.1 ABC transporter ATP-binding protein Regulator
  OIE42_RS22865 (OIE42_22850) - 5175689..5177134 (-) 1446 WP_371652582.1 FGGY family carbohydrate kinase -
  OIE42_RS22870 (OIE42_22855) - 5177234..5177548 (-) 315 WP_406344676.1 YtxH domain-containing protein -
  OIE42_RS22890 (OIE42_22875) - 5178875..5179624 (+) 750 WP_371652580.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62658.70 Da        Isoelectric Point: 5.7142

>NTDB_id=670011 OIE42_RS22860 WP_406344674.1 5173718..5175451(-) (rcrP) [Streptomyces sp. NBC_00648]
MLIRLLRTHLVPYKKPIALLVLLQLLQTCATLYLPTLNADIIDNGVVSGDTGYILEFGGIMIAVSLVQVVCNVGAVYFGA
RTASAVGRDMRAAVFGRVQSFSSREVGHFGAPTLITRTTNDVQQVQMLTLMSFTLMVSAPIMCFGGIIMALGQDVPLSAV
LLAVVPVLGISVSLIVRRMRPLFRTMQTRLDTVNRVLREQITGNRVIRAFVKDDYEKNRFKGANTELTDVSLGTGRLMAL
MFPTVMTVVNVSSVAVVWFGAHRIDSGSLQIGQLTAFLTYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLATDTSVVP
PLSPVRELRRSGHLEVRGADFTYPGAEESVLNGVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGTVLVDGEDVR
GIDPVLLAKTVSMVPQKPYLFSGTVATNLRYGNPDATDDDLWHALEVAQAKEFVSELEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALLHETREATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMAEN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=670011 OIE42_RS22860 WP_406344674.1 5173718..5175451(-) (rcrP) [Streptomyces sp. NBC_00648]
GTGCTCATACGACTCCTGCGGACCCATCTGGTTCCGTACAAGAAACCGATCGCGCTCCTGGTGCTGCTGCAGCTGCTCCA
GACGTGCGCGACCCTCTATCTGCCGACCCTGAACGCCGACATCATCGACAACGGTGTCGTCAGCGGGGACACCGGCTACA
TCCTGGAGTTCGGCGGCATCATGATCGCCGTCAGCCTGGTCCAGGTGGTCTGCAACGTCGGCGCCGTCTACTTCGGCGCA
CGCACCGCGTCCGCCGTGGGCCGGGACATGCGGGCGGCCGTCTTCGGGCGCGTCCAGTCGTTCTCCTCGCGCGAAGTGGG
CCACTTCGGGGCGCCGACCCTGATCACCCGGACCACCAACGACGTACAGCAGGTCCAGATGCTGACGCTGATGTCGTTCA
CGCTGATGGTGTCCGCGCCCATCATGTGCTTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTGCCGCTGTCGGCGGTG
CTGCTCGCCGTGGTGCCGGTGCTCGGCATCTCCGTCTCACTGATCGTGCGCAGGATGCGGCCGCTGTTCCGCACCATGCA
GACCCGCCTGGACACGGTGAACCGCGTACTGCGCGAGCAGATCACCGGCAACCGTGTGATCAGGGCGTTCGTGAAGGACG
ACTACGAGAAGAACCGCTTCAAGGGCGCCAACACCGAGCTGACGGACGTCTCCCTGGGCACCGGCCGGCTGATGGCGCTG
ATGTTCCCCACGGTCATGACGGTGGTCAACGTCTCCTCGGTGGCCGTGGTGTGGTTCGGCGCCCACCGGATCGACAGCGG
CTCCCTGCAGATCGGCCAGCTCACCGCGTTCCTCACGTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACGTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCGAGGAGGTCCTCGCCACCGACACCAGTGTGGTCCCG
CCGCTCTCGCCGGTGCGCGAGCTGCGCCGCAGCGGCCATCTGGAGGTCCGCGGCGCCGACTTCACCTACCCGGGCGCCGA
GGAGTCCGTCCTGAACGGGGTGGACCTGGTGGCCCGTCCCGGCGAGACCACCGCGATCATCGGGTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGGCTGGTGCCGCGGCTGTTCGACGTGACGGACGGCACGGTCCTGGTCGACGGCGAGGACGTGCGC
GGAATCGATCCCGTACTGCTCGCCAAGACCGTGTCGATGGTGCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
CAACCTGCGGTACGGCAATCCCGACGCCACCGACGACGACCTGTGGCACGCCCTGGAGGTCGCCCAGGCCAAGGAGTTCG
TCTCCGAGCTGGAGGGCGGGCTCAACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGCCAGCGCCAGCGGCTC
GCGATCGCGCGGACCCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTCGACTACGCGACGGA
CGCGGCCCTGCGGGCGGCGCTGCTGCACGAGACGCGCGAGGCGACCGTCGTGATCGTGGCCCAGCGGGTCTCCACGATCC
GCGACGCCGACCGGATCGTCGTCCTGGACGAGGGCCGGGTCGTCGGCACCGGCCGCCACCACGAGCTGATGGCCGAGAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCCGAGGCGGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.137

100

0.406