Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OIE42_RS22855 Genome accession   NZ_CP109038
Coordinates   5171790..5173721 (-) Length   643 a.a.
NCBI ID   WP_406344672.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00648     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5166790..5178721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE42_RS22840 (OIE42_22825) - 5167116..5168396 (+) 1281 WP_371652587.1 NAD(P)/FAD-dependent oxidoreductase -
  OIE42_RS22845 (OIE42_22830) dnaG 5168436..5170331 (+) 1896 WP_406344668.1 DNA primase -
  OIE42_RS22850 (OIE42_22835) - 5170517..5171749 (+) 1233 WP_406344670.1 RNA polymerase sigma factor -
  OIE42_RS22855 (OIE42_22840) rcrQ 5171790..5173721 (-) 1932 WP_406344672.1 ABC transporter ATP-binding protein Regulator
  OIE42_RS22860 (OIE42_22845) rcrP 5173718..5175451 (-) 1734 WP_406344674.1 ABC transporter ATP-binding protein Regulator
  OIE42_RS22865 (OIE42_22850) - 5175689..5177134 (-) 1446 WP_371652582.1 FGGY family carbohydrate kinase -
  OIE42_RS22870 (OIE42_22855) - 5177234..5177548 (-) 315 WP_406344676.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69707.06 Da        Isoelectric Point: 5.6087

>NTDB_id=670010 OIE42_RS22855 WP_406344672.1 5171790..5173721(-) (rcrQ) [Streptomyces sp. NBC_00648]
MSGNMARMMGQGDGKRSMDFKGSSKRLLRQLAPEKGTLYVMVVAAVLSVALSVVGPKILGKATDLVFAGVVGRQMPDGTT
KEQALDRLREKGDGGLADMLSGVDFTPGHGIDFGSVGGVLLWALAVYVGAGLLMLVATRLSNRAINRTVFRMREQVQAKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLAMMFWISPLLALVALATVPLSVVVATKIGKR
SQPQFVQQWKTTGRLNAHVEEMYTGHTLVKVFGRQEESARQFDEQNEALYEAGFKAQFNSGVMQPLMMFISNLNYVLVAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEPEPDAKSAERPVERRGAVTL
EKVAFRYDPQKPLIDDLSLKVEPGQTVAIVGPTGAGKTTLVNLLMRFYDVTDGRITLDGVDAARMSREELRSGIGMVLQD
TWLFGGTIADNIAYGASRPVTREEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLAADGAYARLYAAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=670010 OIE42_RS22855 WP_406344672.1 5171790..5173721(-) (rcrQ) [Streptomyces sp. NBC_00648]
ATGAGCGGAAACATGGCCCGGATGATGGGTCAGGGCGACGGCAAACGCTCGATGGACTTCAAGGGCTCCTCGAAGCGGCT
GCTGCGGCAACTCGCCCCGGAGAAGGGCACGCTCTATGTGATGGTCGTCGCCGCGGTGCTCAGCGTCGCGCTGTCGGTGG
TCGGGCCGAAGATCCTCGGCAAGGCGACCGACCTGGTCTTCGCGGGCGTCGTCGGCCGGCAGATGCCGGACGGGACGACC
AAGGAGCAGGCTCTCGACCGGCTGCGCGAGAAGGGCGACGGCGGGCTCGCCGACATGCTCTCCGGGGTGGACTTCACCCC
CGGCCACGGCATCGACTTCGGCTCGGTCGGCGGGGTGCTGCTCTGGGCGCTCGCGGTGTACGTGGGCGCGGGGCTGCTGA
TGCTGGTGGCGACCCGGCTCTCCAACCGGGCGATCAACCGCACGGTGTTCCGGATGCGCGAGCAGGTGCAGGCGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCGCGCCAAGCGCGGCGAGGTGCTCAGCCGCGCCACCAACGACATCGACAACAT
CTCGCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCACTGCTCACCATCGTCGGCGTGCTCGCGATGATGTTCT
GGATCTCGCCGCTGCTCGCCCTGGTGGCGCTGGCGACCGTGCCACTGTCGGTGGTCGTCGCGACGAAGATCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGACCACGGGCCGGCTCAACGCGCACGTGGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGGCGCCAGGAGGAGTCGGCGCGGCAGTTCGACGAGCAGAACGAGGCGCTGTACGAGGCCGGGT
TCAAGGCGCAGTTCAACAGCGGTGTGATGCAGCCGCTGATGATGTTCATCTCGAACCTGAACTACGTCCTGGTCGCGGTC
GTCGGCGGGCTGCGGGTCGCCTCCGGCGCGCTGTCGATCGGCGATGTGCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTCACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGGGTCGCCTCCGCCGAGCGGATCTTCGAACTGC
TCGACGCGGACGAGCAGGAGCCGGAGCCGGACGCGAAGTCGGCCGAGCGGCCGGTGGAGCGGCGCGGCGCGGTGACGCTG
GAGAAGGTGGCGTTCCGCTACGACCCGCAGAAGCCGCTCATCGACGACCTGTCGCTGAAGGTCGAGCCGGGCCAGACGGT
CGCGATCGTCGGCCCGACCGGCGCGGGCAAGACGACGCTGGTCAACCTGCTGATGCGGTTCTACGACGTGACGGACGGGC
GGATCACCCTGGACGGGGTGGACGCGGCCCGGATGTCGCGCGAGGAGCTGCGCTCGGGCATCGGCATGGTGCTCCAGGAC
ACCTGGCTGTTCGGCGGCACCATCGCGGACAACATCGCGTACGGGGCGTCGCGGCCGGTCACCCGCGAGGAGATCGAGGA
GGCGGCGCGGGCCGCGCACGCGGACCGGTTCGTACGGACGCTGCCGGACGGCTACGACACGGTGATCGACGACGAGGGTA
CGGGGGTAAGCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTGGAC
GAGGCGACGAGTTCGGTGGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGCGGCTCGCCCATGGGCGCACGAG
CTTTGTGATCGCCCACCGGCTGTCGACCATTCGCGACGCCGACGTGATCCTGGTGATGGAGAACGGGTCCATCGTCGAAC
AGGGCACGCACGACGAGCTGCTGGCGGCGGACGGGGCCTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCG
GAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-350)

ABC transporter (ABC_tran)

(415-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.385

97.045

0.392