Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   OIE42_RS14345 Genome accession   NZ_CP109038
Coordinates   3218331..3220217 (-) Length   628 a.a.
NCBI ID   WP_406343088.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3213331..3225217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE42_RS14330 (OIE42_14315) - 3214380..3215579 (-) 1200 WP_371654123.1 FAD-dependent oxidoreductase -
  OIE42_RS14335 (OIE42_14320) - 3215639..3216889 (-) 1251 WP_406343086.1 ATP-grasp domain-containing protein -
  OIE42_RS14340 (OIE42_14325) fahA 3217071..3218294 (+) 1224 WP_406343087.1 fumarylacetoacetase -
  OIE42_RS14345 (OIE42_14330) recQ 3218331..3220217 (-) 1887 WP_406343088.1 DNA helicase RecQ Machinery gene
  OIE42_RS14350 (OIE42_14335) nuoN 3220530..3222185 (-) 1656 WP_406343089.1 NADH-quinone oxidoreductase subunit NuoN -
  OIE42_RS14355 (OIE42_14340) - 3222182..3223753 (-) 1572 WP_371654119.1 NADH-quinone oxidoreductase subunit M -

Sequence

Protein


Download         Length: 628 a.a.        Molecular weight: 68552.75 Da        Isoelectric Point: 5.3637

>NTDB_id=669986 OIE42_RS14345 WP_406343088.1 3218331..3220217(-) (recQ) [Streptomyces sp. NBC_00648]
MNGTEGTVEVADEPAVGAVVESEALRTLNRVFGYETFRGDQGEVIEHVVAGGDAVVLMPTGAGKSLCYQIPALVRPGTGV
VVSPLIALMQDQVDALRALGVRAGFINSTQDFDERRTVEAELLAGELDLLYLAPERLRVEATLDLLSRAKISVFAIDEAH
CVAQWGHDFRPDYLALSLLGERWPDVPRIALTATATRVTHREITDRLVMPHARHFEASFDRPNIQYRIVPKNDPKKQLLT
FLKEEHDGDAGIVYCLSRASVEKTAQYLSDNGVAAVPYHAGLDAGTRARHQSRFLREDGLVVVATIAFGMGIDKPDVRFV
AHLDLPKSVEGYYQETGRAGRDGLPSTAWMAYGLQDVVQQRKMIQGGEGDEAFRRRAAAHLDSMLALCETAGCRRAQLLG
YFGQDTTADHCGNCDTCLNPPETWDGTVAAQKALSTVVRLERERRQKFGAGQIIDILLGRKTAKVIQFDHDALSVFGIGE
DLSEAQWRGVVRQLLAQGLLAVEGEYGTLVLTETSGEVLGRRREVRFRSEPAKPERAPRARGAAKAKAAPADFPEEAAPL
FEALRAWRAAEAREQGVPAYVIFHDATLREIAVARPGSVEELGTIAGVGEKKLATYGEGVLEVLGEQE

Nucleotide


Download         Length: 1887 bp        

>NTDB_id=669986 OIE42_RS14345 WP_406343088.1 3218331..3220217(-) (recQ) [Streptomyces sp. NBC_00648]
ATGAACGGGACGGAAGGGACGGTCGAGGTGGCGGACGAGCCGGCGGTCGGGGCAGTGGTCGAGAGCGAGGCGCTGCGGAC
GCTGAACCGGGTCTTCGGCTACGAGACCTTCCGCGGTGACCAGGGCGAGGTCATCGAGCATGTGGTGGCCGGCGGGGACG
CCGTGGTGCTCATGCCGACGGGCGCCGGAAAGTCGCTCTGCTACCAGATCCCGGCCCTGGTCAGACCGGGTACGGGCGTC
GTCGTCTCGCCGCTGATCGCCCTGATGCAGGACCAGGTGGACGCGCTGCGGGCGCTCGGCGTGCGAGCCGGTTTCATCAA
CTCGACGCAGGACTTCGACGAGCGCCGCACGGTGGAGGCGGAGCTCCTCGCGGGCGAGCTCGACCTGCTCTATCTGGCCC
CGGAGCGGCTGCGCGTGGAGGCCACGCTCGATCTGCTCTCGCGGGCCAAGATCTCGGTCTTCGCGATCGACGAGGCGCAC
TGCGTGGCGCAGTGGGGCCACGACTTCCGCCCGGACTACCTGGCGCTCTCGCTGCTCGGGGAGCGCTGGCCGGACGTGCC
GCGCATCGCGCTGACGGCGACGGCGACGCGGGTCACCCACCGGGAGATCACCGACCGTCTGGTGATGCCGCACGCGCGCC
ACTTCGAGGCGAGCTTCGACCGGCCGAACATCCAGTACCGGATCGTGCCGAAGAACGACCCCAAGAAGCAGCTCCTGACC
TTCCTGAAGGAGGAGCACGACGGGGACGCGGGCATCGTCTACTGCCTCTCGCGCGCCTCCGTGGAGAAGACCGCGCAGTA
TCTGAGCGACAACGGGGTGGCGGCGGTGCCGTACCACGCGGGGCTCGACGCGGGCACGCGCGCGCGGCACCAGTCCCGCT
TCCTGCGGGAGGACGGCCTGGTCGTGGTGGCGACCATCGCCTTCGGCATGGGCATCGACAAGCCGGACGTCCGGTTCGTG
GCCCATCTGGACCTGCCCAAGTCGGTCGAGGGCTACTACCAGGAGACGGGCCGCGCGGGCCGCGACGGCCTGCCGTCCAC
GGCGTGGATGGCGTACGGCCTTCAGGACGTGGTCCAGCAGCGCAAGATGATCCAGGGCGGTGAGGGCGACGAGGCGTTCC
GGCGACGGGCGGCCGCGCACCTGGACTCGATGCTGGCGCTCTGCGAGACGGCCGGGTGCCGCCGCGCCCAGCTCCTCGGC
TACTTCGGCCAGGACACCACGGCCGACCACTGCGGCAACTGCGACACGTGTCTGAACCCGCCCGAGACCTGGGACGGCAC
GGTGGCCGCGCAGAAGGCGCTCTCCACGGTCGTCCGGCTGGAGCGGGAGCGGCGCCAGAAGTTCGGGGCGGGCCAGATCA
TCGACATCCTGCTCGGTCGCAAGACGGCCAAGGTGATCCAGTTCGACCACGACGCGCTGTCGGTGTTCGGCATCGGCGAG
GACCTCTCCGAGGCGCAGTGGCGGGGCGTGGTGCGGCAGTTGCTCGCCCAGGGCCTGCTGGCGGTGGAGGGCGAGTACGG
GACGCTGGTCCTGACGGAGACCAGCGGCGAGGTCCTCGGGCGCCGGCGCGAGGTCAGGTTCCGCTCGGAACCGGCGAAGC
CGGAGCGCGCGCCCCGCGCACGGGGTGCGGCCAAGGCGAAGGCGGCCCCGGCCGACTTCCCGGAGGAGGCGGCCCCGCTC
TTCGAGGCGCTGCGCGCCTGGCGGGCCGCTGAGGCCCGCGAGCAGGGCGTCCCGGCGTATGTGATCTTCCACGACGCGAC
GCTGCGGGAGATCGCCGTGGCCCGCCCCGGCTCGGTGGAGGAGCTGGGCACGATCGCCGGGGTGGGCGAGAAGAAGCTGG
CGACGTACGGGGAGGGTGTGCTGGAGGTGCTGGGGGAGCAGGAGTAG

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(355-418)

RQC domain (RQC)

(420-534)

DEAD/DEAH box helicase (DEAD)

(41-197)

HRDC domain (HRDC)

(560-624)

Helicase conserved C-terminal domain (Helicase_C)

(236-342)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

38.294

95.223

0.365