Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OIE42_RS08605 Genome accession   NZ_CP109038
Coordinates   1946295..1947089 (+) Length   264 a.a.
NCBI ID   WP_371655100.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00648     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1941295..1952089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE42_RS08590 (OIE42_08580) - 1941429..1941959 (+) 531 WP_406342107.1 TerD family protein -
  OIE42_RS08595 (OIE42_08585) - 1942101..1944995 (-) 2895 WP_371655102.1 vitamin B12-dependent ribonucleotide reductase -
  OIE42_RS08600 (OIE42_08590) nrdR 1945137..1945658 (-) 522 WP_371655101.1 transcriptional regulator NrdR -
  OIE42_RS08605 (OIE42_08595) dinR/lexA 1946295..1947089 (+) 795 WP_371655100.1 transcriptional repressor LexA Regulator
  OIE42_RS08610 (OIE42_08600) - 1947230..1949200 (-) 1971 WP_406342109.1 ATP-dependent DNA helicase -
  OIE42_RS08615 (OIE42_08605) - 1949238..1951130 (-) 1893 WP_406347086.1 IucA/IucC family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28642.33 Da        Isoelectric Point: 6.9852

>NTDB_id=669967 OIE42_RS08605 WP_371655100.1 1946295..1947089(+) (dinR/lexA) [Streptomyces sp. NBC_00648]
MTTTADSATITAQDRSQTRLEPVHAMNDAVTNQEGGDPARATRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDNHIWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=669967 OIE42_RS08605 WP_371655100.1 1946295..1947089(+) (dinR/lexA) [Streptomyces sp. NBC_00648]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGACCCGACTTGAGCCGGTGCATGCCATGAA
TGACGCAGTCACGAACCAGGAGGGCGGCGACCCAGCGCGGGCCACACGCTCGCTGCCCGGCCGACCTCCGGGCATCAGGG
CGGACAGCTCCGGTCTCACCGACCGGCAGCGGCGGGTCATCGAGGTCATCCGGGACTCCGTCCAGCGCCGGGGGTACCCG
CCGTCGATGCGGGAGATCGGTCAGGCGGTGGGTCTCTCCAGCACGTCCTCCGTCGCCCACCAGCTCATGGCCCTGGAGCG
CAAGGGCTTCCTCCGCCGCGACCCCCACCGCCCGCGGGCGTACGAGGTGCGCGGCTCGGACCAGCCGAGCAGCCAGCCGA
CCGACACCACCGGCAAGCCCGCGGCCTCCTATGTGCCGCTGGTCGGCCGGATCGCCGCCGGTGGCCCCATCCTCGCCGAG
GAGTCGGTCGAGGACGTCTTCCCGCTGCCCCGCCAGCTGGTCGGCGACGGCGAGCTCTTCGTCCTGAAGGTCGTCGGTGA
CTCGATGATCGAGGCCGCGATCTGCGACGGCGACTGGGTCACCGTGCGCCGCCAGCCGGTCGCGGAGAACGGCGACATCG
TCGCGGCGATGCTGGACGGCGAAGCCACGGTGAAGCGGTTCAAGCGCGAGGACAACCACATCTGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCCATCCCCGGTGACGAGGCCACCATCCTCGGCAAGGTGGTGGCGGTGCTGCGGCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

47.17

80.303

0.379