Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MTO92_RS07510 Genome accession   NZ_CP094503
Coordinates   1531069..1532442 (-) Length   457 a.a.
NCBI ID   WP_056982928.1    Uniprot ID   A0A511DTZ4
Organism   Lentilactobacillus kefiri strain Fanghua     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1526069..1537442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO92_RS07490 (MTO92_07490) - 1526323..1526733 (-) 411 WP_054769179.1 Mini-ribonuclease 3 -
  MTO92_RS07495 (MTO92_07495) cysS 1526742..1528148 (-) 1407 WP_056982935.1 cysteine--tRNA ligase -
  MTO92_RS07500 (MTO92_07500) gltX 1528289..1529782 (-) 1494 WP_056982933.1 glutamate--tRNA ligase -
  MTO92_RS07505 (MTO92_07505) - 1529870..1531042 (-) 1173 WP_179286796.1 PIN/TRAM domain-containing protein -
  MTO92_RS07510 (MTO92_07510) radA 1531069..1532442 (-) 1374 WP_056982928.1 DNA repair protein RadA Machinery gene
  MTO92_RS07515 (MTO92_07515) - 1532535..1533074 (-) 540 WP_054769178.1 dUTP diphosphatase -
  MTO92_RS07520 (MTO92_07520) rpiA 1533219..1533902 (+) 684 WP_056982926.1 ribose-5-phosphate isomerase RpiA -
  MTO92_RS07525 (MTO92_07525) - 1534045..1535379 (+) 1335 WP_056982924.1 C1 family peptidase -
  MTO92_RS07530 (MTO92_07530) - 1535443..1536114 (-) 672 WP_056982922.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  MTO92_RS07535 (MTO92_07535) - 1536242..1537186 (-) 945 WP_056982921.1 AEC family transporter -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49656.06 Da        Isoelectric Point: 7.7031

>NTDB_id=669902 MTO92_RS07510 WP_056982928.1 1531069..1532442(-) (radA) [Lentilactobacillus kefiri strain Fanghua]
MAKVKTQFVCQNCGYISPRYLGRCPNCNEWNTLVEETVAPKNSTMATKSLRRNGIHDNKPEAINKVEFHQDVRFKTDMEE
LNRVLGGGVVPGSLILIGGDPGIGKSTLMLQVSGQLSKSGTILYVSGEESASQIKMRADRLGVNSDNLYVYPETDMDVIK
DTINDMKPDAVVIDSVQTMQIPELQSATGSVAQIREVTADLMNIAKGQGITVFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDLHHSYRILRTVKNRFGSTNELGVFEMRTDGLREVKNPSEIFLEERLKDATGSAIVVSMEGTRPILVEIQALVTASVF
GNAQRTATGLDRNRVSLIMAVLEKRAGLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYKNRGTSPTECYVGELGLT
GEIRRVTRIEQRVAEAQKLGFKRVLVPANNLQGWNPPKGIDVVGVSTLSQALKLALG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=669902 MTO92_RS07510 WP_056982928.1 1531069..1532442(-) (radA) [Lentilactobacillus kefiri strain Fanghua]
TTGGCAAAAGTTAAAACTCAATTTGTATGTCAAAACTGCGGCTACATTTCCCCAAGGTATTTGGGACGCTGTCCGAACTG
TAATGAGTGGAACACCCTCGTTGAAGAAACCGTTGCACCGAAAAACAGTACCATGGCAACAAAGAGTTTGCGGCGAAATG
GCATTCATGACAACAAACCCGAAGCAATCAATAAAGTTGAATTTCACCAAGACGTTCGTTTTAAGACTGATATGGAAGAG
CTCAACCGAGTTCTTGGCGGCGGGGTTGTTCCCGGATCACTGATTTTAATCGGTGGCGATCCTGGAATTGGAAAATCAAC
GTTGATGCTGCAGGTTTCAGGTCAGCTTAGCAAGTCTGGTACCATATTATATGTATCCGGAGAGGAAAGTGCCTCGCAGA
TTAAGATGCGGGCCGATCGACTGGGTGTCAACAGTGATAACCTCTATGTTTATCCGGAAACCGATATGGACGTGATTAAG
GATACAATCAATGATATGAAGCCGGATGCGGTGGTCATTGATTCTGTTCAAACCATGCAGATTCCTGAATTGCAGTCGGC
TACCGGATCGGTTGCCCAGATCAGAGAAGTAACCGCTGACCTGATGAACATTGCCAAGGGTCAGGGCATTACGGTCTTTG
TTGTCGGTCATGTGACCAAGGGTGGCGCGATCGCCGGACCAAAGATTTTGGAACACATGGTGGACACTGTCCTGTATTTT
GAAGGTGATTTACATCACTCATACCGAATCTTGCGAACGGTTAAGAATCGATTTGGTTCAACCAATGAATTGGGTGTGTT
TGAAATGCGGACCGATGGCTTGCGCGAAGTGAAGAACCCTTCGGAAATCTTTTTGGAAGAACGGCTTAAAGATGCGACTG
GATCTGCCATTGTGGTATCAATGGAAGGAACCCGGCCAATTTTGGTTGAAATTCAGGCTTTGGTGACGGCTTCTGTATTC
GGGAATGCCCAACGAACAGCTACTGGTCTTGACCGTAATCGGGTATCATTGATTATGGCAGTTTTGGAAAAGCGTGCCGG
ATTGATGCTTCAAAACCAGGATGCTTATTTAAAGGCTGCCGGCGGCGTTAAGCTTGATGAACCGGCAATTGATCTGGCAA
TCGCTGTTAGTATTGCTTCATCATACAAAAACCGGGGTACCAGTCCAACTGAGTGTTATGTCGGTGAACTTGGGCTTACC
GGTGAGATTCGTCGGGTCACCAGGATTGAACAACGGGTTGCCGAGGCACAGAAATTGGGCTTTAAACGCGTGTTGGTGCC
AGCCAACAATCTTCAGGGATGGAACCCACCAAAAGGTATCGATGTGGTGGGAGTTTCAACCCTTTCACAAGCATTAAAGC
TTGCACTGGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A511DTZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

64.615

99.562

0.643
  radA Streptococcus mitis SK321

64.396

99.562

0.641
  radA Streptococcus pneumoniae Rx1

64.396

99.562

0.641
  radA Streptococcus pneumoniae TIGR4

64.396

99.562

0.641
  radA Streptococcus pneumoniae D39

64.396

99.562

0.641
  radA Streptococcus pneumoniae R6

64.396

99.562

0.641
  radA Bacillus subtilis subsp. subtilis str. 168

62.609

100

0.63