Detailed information NTG0669860

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: MST30_RS04370
• Genome accession: NZ_CP094494
• Coordinates: 982414..983772 (-)
• Length: 452 a.a.
• NCBI ID: WP_243473186.1
• Uniprot ID: -
• Organism: Winogradskyella sp. MH6
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 977414..988772

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MST30_RS04370	radA	982414..983772 (-)	1359	WP_243473186.1	DNA repair protein RadA	Machinery gene
MST30_RS04375	-	983787..985145 (-)	1359	WP_243473187.1	alpha/beta hydrolase-fold protein	-
MST30_RS04380	-	985159..986304 (-)	1146	WP_243473188.1	alpha/beta hydrolase-fold protein	-
MST30_RS04385	-	986349..987308 (-)	960	WP_243473189.1	lysylphosphatidylglycerol synthase transmembrane domain-containing protein	-
MST30_RS04390	panD	987315..987665 (-)	351	WP_138432327.1	aspartate 1-decarboxylase	-
MST30_RS04395	panC	987679..988530 (-)	852	WP_243473190.1	pantoate--beta-alanine ligase	-

Sequence

Protein

• Length: 452 a.a.
• Molecular weight: 49863.28 Da
• Isoelectric Point: 6.6437

>NTDB_id=669860 MST30_RS04370 WP_243473186.1 982414..983772(-) (radA) [Winogradskyella sp. MH6]
MAKVKTTFFCQNCGAQYVKWQGQCNSCKQWNTIAEEVIQKPEKSDWKSSSATTKRVSKPLKINEIDTAQEARLNMQDAEF
NRVLGGGMVQGSLTLLGGEPGIGKSTLLLQVALSLPYKTLYVSGEESQKQIKMRAERINPKENNCYILTETKTQNIFKQI
EALEPDLVIIDSIQTLHSDYIESSAGSISQIKECTTELIKYAKETTTPVLLIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVFRILRAHKNRFGSTNELGIYEMQGSGLREVSNPSEILISEKDGELSGNAIAATLEGLRPLMIEVQALVSTAVYGTP
QRSATGFNAKRLNMLLAVLEKRAGFRLGAKDVFLNITGGITVDDPAIDLAVVASILSSNEDVALPSDYCFAAEVGLSGEI
RPVQRIEQRILEAEKLGFTTIFVSKYNKLSIKNTTIKIQLISKIEDLTNFII

Nucleotide

• Length: 1359 bp

>NTDB_id=669860 MST30_RS04370 WP_243473186.1 982414..983772(-) (radA) [Winogradskyella sp. MH6]
ATGGCTAAAGTAAAAACAACTTTTTTTTGTCAAAATTGCGGTGCGCAATATGTTAAATGGCAAGGACAATGCAATTCTTG
TAAACAATGGAACACTATTGCCGAAGAAGTTATTCAAAAACCAGAAAAAAGCGATTGGAAATCTAGTTCTGCAACAACTA
AGCGTGTATCTAAGCCTTTAAAAATAAACGAAATAGATACTGCTCAAGAAGCAAGATTAAACATGCAAGATGCAGAATTT
AATCGTGTACTTGGAGGTGGAATGGTACAAGGCTCATTAACGCTCTTAGGTGGTGAACCTGGTATTGGTAAAAGTACATT
GTTGCTTCAGGTAGCATTGAGTTTACCTTACAAAACCCTTTATGTTTCAGGCGAAGAAAGTCAGAAGCAAATTAAAATGC
GTGCTGAGCGTATTAACCCAAAAGAGAATAATTGCTACATTCTTACCGAAACAAAAACTCAAAACATCTTTAAGCAAATA
GAAGCTTTAGAGCCAGATTTGGTTATTATAGATTCTATTCAAACTTTACATAGCGATTATATAGAATCTTCAGCAGGAAG
TATTTCTCAAATAAAAGAATGCACTACAGAGCTAATAAAATATGCTAAGGAAACAACAACACCAGTACTTTTAATTGGTC
ACATCACCAAGGATGGTAATATTGCTGGTCCAAAGATTTTAGAGCACATGGTAGACACGGTTTTACAGTTTGAAGGTGAT
CGTAACCATGTGTTTAGAATTTTAAGAGCACACAAAAACCGATTTGGATCTACCAATGAGCTTGGTATATATGAAATGCA
AGGTTCTGGTTTGCGCGAAGTCTCTAACCCTTCAGAGATTTTAATTTCTGAAAAAGATGGCGAACTATCTGGTAATGCTA
TTGCAGCGACTTTAGAAGGGTTGCGACCATTAATGATAGAAGTGCAAGCATTAGTAAGCACAGCAGTTTATGGTACACCA
CAACGTTCAGCAACTGGTTTTAATGCTAAGCGTTTAAATATGCTCTTAGCTGTTTTAGAAAAAAGAGCAGGTTTTAGATT
GGGAGCAAAAGATGTCTTTTTAAATATCACAGGCGGAATTACAGTAGATGACCCAGCAATAGATTTAGCAGTTGTGGCTT
CAATTTTATCATCAAATGAAGATGTGGCTTTACCAAGTGATTATTGTTTTGCCGCTGAAGTTGGTTTATCAGGAGAAATA
AGACCAGTACAACGCATAGAACAACGTATTTTAGAAGCTGAAAAGCTTGGTTTTACTACCATTTTTGTGTCCAAATACAA
TAAGTTAAGTATAAAAAACACTACAATCAAAATTCAATTAATTTCTAAGATAGAAGATCTAACAAACTTTATAATCTGA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (327-427)

• AAA domain (AAA_25) (67-219)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae Rx1	49.887	98.009	0.489
radA	Streptococcus mitis SK321	49.887	98.009	0.489
radA	Streptococcus mitis NCTC 12261	49.887	98.009	0.489
radA	Streptococcus pneumoniae TIGR4	49.887	98.009	0.489
radA	Streptococcus pneumoniae D39	49.887	98.009	0.489
radA	Streptococcus pneumoniae R6	49.887	98.009	0.489
radA	Bacillus subtilis subsp. subtilis str. 168	50.93	95.133	0.485