Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG696_RS37980 Genome accession   NZ_CP109033
Coordinates   8857138..8858130 (+) Length   330 a.a.
NCBI ID   WP_327170435.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00656 strain NBC 00656     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8852138..8863130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG696_RS37965 (OG696_37965) - 8852835..8853575 (-) 741 WP_405904310.1 DUF305 domain-containing protein -
  OG696_RS37970 (OG696_37970) - 8853551..8854921 (-) 1371 WP_327170437.1 DUF1996 domain-containing protein -
  OG696_RS37975 (OG696_37975) - 8855095..8856810 (-) 1716 WP_405904311.1 discoidin domain-containing protein -
  OG696_RS37980 (OG696_37980) cytR 8857138..8858130 (+) 993 WP_327170435.1 LacI family DNA-binding transcriptional regulator Regulator
  OG696_RS37985 (OG696_37985) - 8858260..8858637 (-) 378 WP_219568176.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  OG696_RS37990 (OG696_37990) - 8858840..8860363 (-) 1524 WP_405904312.1 aldehyde dehydrogenase family protein -
  OG696_RS37995 (OG696_37995) - 8860527..8861780 (-) 1254 WP_405904313.1 GAF domain-containing protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35207.14 Da        Isoelectric Point: 6.0552

>NTDB_id=669859 OG696_RS37980 WP_327170435.1 8857138..8858130(+) (cytR) [Streptomyces sp. NBC_00656 strain NBC 00656]
MKRPTLDVVAARAGVSKSSVSRVINGETTVAPQIRDVVMRAVNELGYVPNGAARNLVTRRTDTLAVVVSDPPQGVVSDDP
LFSAVVRAVSRELETAGKRLVLMLAESDRSRTRVVQYIAGGHVDGVLLVALHGTDPLPAALARQGLPVVSFNRTSAEDVP
YVALDNAGGAELAVRHLLERGRRRIATITGPLELYEARERLDGYRQTLRDTGRRSIVALGDFTRVSGAEAMRQLLEDDPD
LDAVFAANDLMAIGALRTLHQAGRRVPEDVAVIGFDDIEAASYTSPALTSVRSPMADQATAAVHLLLGLIDGGATGPVIM
PNELVVREST

Nucleotide


Download         Length: 993 bp        

>NTDB_id=669859 OG696_RS37980 WP_327170435.1 8857138..8858130(+) (cytR) [Streptomyces sp. NBC_00656 strain NBC 00656]
ATGAAACGCCCCACTCTCGATGTGGTGGCCGCCCGGGCGGGCGTGTCCAAATCGAGCGTCTCCCGGGTGATCAACGGCGA
GACGACGGTCGCCCCGCAGATCCGAGACGTCGTCATGCGCGCCGTGAACGAACTGGGCTACGTGCCCAACGGCGCGGCAC
GCAATCTCGTCACCCGCCGCACGGACACCCTCGCCGTGGTGGTATCCGACCCGCCCCAAGGAGTCGTGTCCGACGACCCC
CTCTTCTCCGCCGTGGTCCGCGCCGTCAGCAGAGAGCTCGAGACGGCGGGCAAACGGCTCGTGCTCATGCTCGCGGAATC
GGACCGGAGCCGGACCAGAGTCGTGCAGTACATCGCCGGCGGGCATGTGGACGGCGTGCTCCTGGTCGCCTTGCACGGTA
CGGACCCGCTGCCCGCCGCACTGGCCCGGCAGGGCCTGCCTGTCGTGTCCTTCAACCGCACCTCCGCAGAGGACGTCCCG
TACGTCGCGCTGGACAACGCCGGCGGGGCGGAGCTGGCCGTGCGTCATCTCCTGGAGCGCGGCCGGCGCCGGATCGCCAC
CATCACCGGGCCGCTCGAACTGTACGAGGCGCGTGAGCGCCTCGATGGCTACCGTCAGACGCTGCGTGACACCGGCCGTC
GCTCCATCGTGGCTCTGGGCGACTTCACCAGAGTCTCCGGTGCCGAAGCCATGCGGCAGCTCTTGGAGGACGATCCCGAC
CTCGATGCGGTGTTCGCAGCCAACGACCTGATGGCGATCGGAGCCCTGCGCACCCTCCATCAAGCGGGCCGACGCGTCCC
CGAAGACGTGGCGGTCATCGGCTTCGACGACATAGAAGCCGCGTCCTACACCAGTCCCGCGCTCACCTCGGTGCGCAGCC
CGATGGCCGACCAGGCGACAGCCGCCGTCCATCTGCTCCTCGGCCTGATCGACGGTGGCGCCACAGGGCCGGTGATCATG
CCGAACGAGCTCGTCGTGCGCGAGTCGACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.207

100

0.361