Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG696_RS02670 Genome accession   NZ_CP109033
Coordinates   640154..641176 (+) Length   340 a.a.
NCBI ID   WP_306105656.1    Uniprot ID   A0ABY9IJ51
Organism   Streptomyces sp. NBC_00656 strain NBC 00656     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 635154..646176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG696_RS02655 (OG696_02645) - 636456..637316 (+) 861 WP_306084240.1 methyltransferase domain-containing protein -
  OG696_RS02660 (OG696_02650) - 637262..638197 (-) 936 WP_405902095.1 helix-turn-helix domain-containing protein -
  OG696_RS02665 (OG696_02655) - 638266..639660 (-) 1395 WP_405902096.1 cellulase family glycosylhydrolase -
  OG696_RS02670 (OG696_02660) cytR 640154..641176 (+) 1023 WP_306105656.1 LacI family DNA-binding transcriptional regulator Regulator
  OG696_RS02675 (OG696_02665) - 641577..642668 (+) 1092 WP_327173320.1 lytic polysaccharide monooxygenase -
  OG696_RS02680 (OG696_02670) - 642784..645255 (-) 2472 WP_405902097.1 beta-glucosidase H -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36848.08 Da        Isoelectric Point: 6.8878

>NTDB_id=669780 OG696_RS02670 WP_306105656.1 640154..641176(+) (cytR) [Streptomyces sp. NBC_00656 strain NBC 00656]
MLKRGSGTPTLEEVAALAGVGRGTVSRVINNASGVKASTRRAVQRAIEELDYVPNLAARSLAGRRADAVALVMTKTDWRL
FGAPFFSEVVRAVGDALTEADVQLLLTLVRTDAERQRLVKYVRGGRIDGALLMSVRAEDRLPDMLADAGLPTVLLGRRSD
EERVTYVDADNVGGARAAVAHLARGGRKSIAAITGPPEMYASRCRLRGYREALRDAGLDEVQSLVVQGDFSEVSGRRAMT
GLIERHPEVDGVFASSDSMAAGAVTALHAAGRRVPQDVAVIGFDDFELAEQTEPPLTTVRQPMEEIGRTMVRLLLEEMDQ
PQVAWRHVILRTQLVVRESA

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=669780 OG696_RS02670 WP_306105656.1 640154..641176(+) (cytR) [Streptomyces sp. NBC_00656 strain NBC 00656]
ATGCTGAAGCGAGGTTCCGGCACACCGACGCTGGAGGAAGTGGCCGCGCTTGCCGGAGTGGGGCGGGGCACGGTCTCCCG
GGTGATCAACAACGCGTCGGGCGTCAAGGCGTCGACACGCCGCGCCGTGCAACGCGCCATCGAGGAACTGGACTACGTCC
CCAACCTGGCCGCGCGCTCACTGGCGGGCCGGCGTGCGGACGCCGTCGCGCTGGTGATGACGAAGACGGACTGGCGGCTG
TTCGGGGCGCCGTTCTTCTCGGAGGTCGTACGGGCGGTCGGGGACGCCCTGACCGAGGCGGACGTGCAACTGCTGCTCAC
GCTCGTCCGCACGGACGCCGAGCGGCAGCGGCTCGTGAAATACGTGCGCGGCGGCCGGATCGACGGGGCTCTGCTCATGT
CCGTACGGGCCGAGGACCGGTTGCCGGACATGCTCGCCGACGCCGGACTGCCCACGGTGCTGCTCGGCCGGCGCTCGGAC
GAGGAACGTGTGACCTATGTGGACGCGGACAACGTGGGTGGCGCAAGGGCCGCGGTCGCCCATCTGGCTCGCGGCGGGCG
GAAATCCATCGCGGCGATCACGGGACCTCCCGAGATGTACGCCTCCCGGTGCAGGCTGCGCGGCTACCGGGAGGCGCTGC
GCGACGCCGGGCTCGACGAGGTCCAGTCCCTGGTCGTACAGGGAGACTTCAGCGAGGTCAGCGGACGGCGGGCGATGACC
GGGCTCATCGAGCGGCACCCGGAGGTCGACGGCGTCTTCGCCTCGTCGGACAGCATGGCCGCCGGGGCGGTGACCGCCCT
GCACGCGGCGGGGCGCCGGGTCCCGCAGGATGTGGCGGTGATCGGCTTCGACGACTTCGAGCTGGCCGAGCAGACCGAAC
CGCCGCTGACGACCGTCCGCCAGCCGATGGAGGAGATCGGCCGGACCATGGTGCGACTGCTGCTGGAGGAGATGGACCAG
CCGCAGGTCGCGTGGCGTCATGTGATCCTGCGGACGCAGCTGGTGGTGCGCGAGTCGGCCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-339)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.965

100

0.362