Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG970_RS26820 Genome accession   NZ_CP109032
Coordinates   5924777..5924992 (-) Length   71 a.a.
NCBI ID   WP_406354331.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00658     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5919777..5929992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG970_RS26805 (OG970_26815) - 5920308..5921660 (-) 1353 WP_406354327.1 hypothetical protein -
  OG970_RS26810 (OG970_26820) - 5922962..5923207 (-) 246 WP_371547444.1 hypothetical protein -
  OG970_RS26815 (OG970_26825) - 5923204..5924409 (-) 1206 WP_406354329.1 pentapeptide repeat-containing protein -
  OG970_RS26820 (OG970_26830) dinR/lexA 5924777..5924992 (-) 216 WP_406354331.1 MarR family transcriptional regulator Regulator
  OG970_RS26825 (OG970_26835) - 5924989..5925297 (-) 309 WP_406354333.1 hypothetical protein -
  OG970_RS26830 (OG970_26840) - 5926374..5927900 (+) 1527 WP_406354335.1 ATP-binding protein -
  OG970_RS26835 (OG970_26845) - 5927800..5928462 (+) 663 WP_406354337.1 response regulator transcription factor -
  OG970_RS26840 (OG970_26850) - 5928607..5929209 (+) 603 WP_406354339.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 71 a.a.        Molecular weight: 8101.31 Da        Isoelectric Point: 11.2769

>NTDB_id=669727 OG970_RS26820 WP_406354331.1 5924777..5924992(-) (dinR/lexA) [Streptomyces sp. NBC_00658]
MIYPLTDRQERILRCIREWIAEHGEAPSIREIGKQVGLSSPSSVLHQLNQLEKHGLISRQRGASRASRLAR

Nucleotide


Download         Length: 216 bp        

>NTDB_id=669727 OG970_RS26820 WP_406354331.1 5924777..5924992(-) (dinR/lexA) [Streptomyces sp. NBC_00658]
ATGATCTACCCCCTCACCGACCGCCAAGAGCGCATCCTCCGGTGCATACGGGAGTGGATCGCCGAACACGGCGAGGCCCC
GAGCATCCGCGAGATCGGGAAGCAGGTCGGGCTGAGCAGCCCGTCGTCCGTGCTCCACCAGCTCAACCAGCTCGAGAAGC
ACGGACTCATCTCCCGCCAGCGGGGTGCCTCGCGCGCAAGCCGGCTCGCCCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.774

87.324

0.408