Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MRS60_RS10895 Genome accession   NZ_CP094459
Coordinates   2348183..2349559 (-) Length   458 a.a.
NCBI ID   WP_131947363.1    Uniprot ID   -
Organism   Burkholderia pyrrocinia strain JK-SH007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2343183..2354559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRS60_RS10875 (MRS60_10875) cls 2343544..2344992 (+) 1449 WP_175749919.1 cardiolipin synthase -
  MRS60_RS10880 (MRS60_10880) - 2345056..2345535 (-) 480 WP_011549528.1 glutathione peroxidase -
  MRS60_RS10885 (MRS60_10885) - 2345672..2347603 (+) 1932 WP_131947362.1 ATP-binding cassette domain-containing protein -
  MRS60_RS10890 (MRS60_10890) - 2347770..2348036 (-) 267 WP_034184728.1 DUF2866 domain-containing protein -
  MRS60_RS10895 (MRS60_10895) radA 2348183..2349559 (-) 1377 WP_131947363.1 DNA repair protein RadA Machinery gene
  MRS60_RS10900 (MRS60_10900) alr 2349571..2350641 (-) 1071 WP_243564685.1 alanine racemase -
  MRS60_RS10905 (MRS60_10905) lplT 2350860..2352167 (+) 1308 WP_034184726.1 lysophospholipid transporter LplT -
  MRS60_RS10910 (MRS60_10910) thiD 2352226..2353035 (+) 810 WP_034184725.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MRS60_RS10915 (MRS60_10915) - 2353054..2354019 (-) 966 WP_175749917.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48835.26 Da        Isoelectric Point: 6.7606

>NTDB_id=669675 MRS60_RS10895 WP_131947363.1 2348183..2349559(-) (radA) [Burkholderia pyrrocinia strain JK-SH007]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPSAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGGAPAAELQLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQIVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTAALIPKANAPKQPIEGLNVMAVERIEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=669675 MRS60_RS10895 WP_131947363.1 2348183..2349559(-) (radA) [Burkholderia pyrrocinia strain JK-SH007]
GTGGCCAAACAGAAAACCGTCTACGTCTGCAGCGAGTGCGGCGGGCAGACCCCGAAGTGGCAGGGGCAGTGTCCGTCGTG
CCAGGCCTGGAATACGCTGGTCGAATCGGTCGCCGAGTCGCCGTCGGCCCACCGTTTCCAGTCGCTCGCGAAGCGGGCGC
CCGTCCAGCGCCTCGTCGACATCGAAGCGGCCGACGTGCCGCGCTTCTCGACCGGCATCGGCGAATTCGACCGCGTGCTC
GGCGGCGGGCTGGTCCCCGGCGGCGTCGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAGCGAACGGCGCGCGCTCTATATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTTGCGCTGCTCGATGGCGGTGCGCCGGCGGCCGAGCTGCAGCTGCTCGCCGAGATCCAGCTCGAAAAGATCCAG
GCCGCGATCGACGCGGAGCGGCCCGACGTGGCCGTGATCGACTCGATCCAGACCGTCTATTCGGAAGCGCTCACGTCGGC
GCCGGGCTCGGTCGCGCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCGAAACAGTCGGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAGGGCAACCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTATTTC
GAGGGCGACACGCATTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTCGCGAATCCGTCCGCGCTGTTCCTGTCGCAGCACGAGCAGATCGTGCCCG
GCTCGTGCGTGCTCGTCACGCAGGAAGGCACGCGCCCGCTGCTCGTCGAAATCCAGGCGCTGGTCGATACCGCGCACGTG
CCGAACCCGCGCCGGCTCGCGGTCGGCCTCGAACAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGGCACGCGGG
CATCGCGTGCTTCGACCAGGACGTGTTCCTCAATGCAGTGGGCGGCGTGAAGATCACCGAGCCGGCCGCCGACCTCGCGG
TGCTGCTCGCGATCCATTCGTCGATGCGCAACAAGGCGCTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTGGGGCTGGCG
GGCGAGATCCGGCCGTCCCCGCGCGGGCAGGAGCGGCTGCGCGAGGCGGCGAAGCTCGGCTTCACGGCCGCGCTGATCCC
GAAGGCGAATGCGCCGAAACAGCCGATCGAAGGGCTGAACGTGATGGCCGTCGAACGGATCGAGCAGGCGATCGACCGCG
TGCGCGATCTCGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.458

100

0.498
  radA Streptococcus mitis SK321

47.162

100

0.472
  radA Streptococcus pneumoniae Rx1

46.855

100

0.472
  radA Streptococcus pneumoniae D39

46.855

100

0.472
  radA Streptococcus pneumoniae R6

46.855

100

0.472
  radA Streptococcus pneumoniae TIGR4

46.855

100

0.472
  radA Streptococcus mitis NCTC 12261

46.827

99.782

0.467