Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG410_RS30310 Genome accession   NZ_CP109031
Coordinates   6930245..6931021 (-) Length   258 a.a.
NCBI ID   WP_081219793.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00659 strain NBC 00659     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6925245..6936021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG410_RS30300 (OG410_30320) - 6926939..6927790 (+) 852 WP_329301992.1 GNAT family N-acetyltransferase -
  OG410_RS30305 (OG410_30325) - 6928065..6930107 (+) 2043 WP_329301993.1 ATP-dependent DNA helicase -
  OG410_RS30310 (OG410_30330) dinR/lexA 6930245..6931021 (-) 777 WP_081219793.1 transcriptional repressor LexA Regulator
  OG410_RS30315 (OG410_30335) nrdR 6931542..6932093 (+) 552 WP_329301994.1 transcriptional regulator NrdR -
  OG410_RS30320 (OG410_30340) - 6932257..6935154 (+) 2898 WP_329301995.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27949.65 Da        Isoelectric Point: 7.4755

>NTDB_id=669664 OG410_RS30310 WP_081219793.1 6930245..6931021(-) (dinR/lexA) [Streptomyces sp. NBC_00659 strain NBC 00659]
MTTTADSATITAQDRSQGRLEPVHAMNEAANHEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYQPI
PGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=669664 OG410_RS30310 WP_081219793.1 6930245..6931021(-) (dinR/lexA) [Streptomyces sp. NBC_00659 strain NBC 00659]
GTGACCACCACCGCAGACAGCGCCACCATCACCGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCGCGAATCATGAGGGGCCAAAGCGTTCCCTGCCTGGCCGACCTCCAGGCATCCGGGCCGACAGCTCGGGACTCA
CGGACCGGCAGCGCCGGGTGATCGAGGTGATCCGGGACTCCGTGCAGCGGCGCGGCTACCCGCCGTCGATGCGGGAGATC
GGGCAGGCCGTGGGCCTCTCCAGCACCTCCTCCGTCGCACACCAGCTGATGGCATTGGAGCGCAAGGGCTTCCTGCGGCG
AGACCCGCACCGCCCGCGCGCGTACGAGGTACGGGGGTCCGACCAGTCGTCGGTGCAGCCGACGGACACGGCGGGCAAGC
CGGCCGCGTCCTACGTTCCGCTCGTCGGCCGTATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTGGAGGACGTG
TTCCCCCTCCCCCGCCAGCTCGTCGGCGACGGGGAGCTGTTCGTCCTGAAGGTCGTCGGTGACTCGATGATCGAGGCCGC
CATCTGCGACGGGGACTGGGTGACGGTCCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTCGCCGCGATGCTGGACG
GCGAAGCCACGGTGAAGCGATTCAAGCGCGAGGACGGACACGTGTGGCTGCTGCCGCACAACTCGGCGTACCAGCCGATC
CCCGGTGACGAGGCGACCATCCTCGGAAAGGTCGTCGCCGTGCTGCGCCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.714

81.395

0.372