Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MQW34_RS10265 Genome accession   NZ_CP094455
Coordinates   1982731..1983018 (+) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus sp. ZJS3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1977731..1988018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQW34_RS10245 (MQW34_10245) - 1978906..1979103 (+) 198 WP_078420095.1 DUF4083 domain-containing protein -
  MQW34_RS10250 (MQW34_10250) - 1979134..1979595 (+) 462 WP_078420094.1 NUDIX hydrolase -
  MQW34_RS10255 (MQW34_10255) nadE 1979644..1980462 (-) 819 WP_000174883.1 ammonia-dependent NAD(+) synthetase -
  MQW34_RS10260 (MQW34_10260) - 1980734..1982614 (+) 1881 WP_243500222.1 FtsX-like permease family protein -
  MQW34_RS10265 (MQW34_10265) abrB 1982731..1983018 (+) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MQW34_RS10270 (MQW34_10270) - 1983293..1984243 (+) 951 WP_078420092.1 serine protease -
  MQW34_RS10275 (MQW34_10275) - 1984451..1985554 (-) 1104 WP_243500224.1 ABC transporter ATP-binding protein -
  MQW34_RS10280 (MQW34_10280) - 1985792..1986655 (-) 864 WP_243500226.1 PucR family transcriptional regulator -
  MQW34_RS10285 (MQW34_10285) - 1986725..1987585 (-) 861 WP_243500228.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=669639 MQW34_RS10265 WP_000648331.1 1982731..1983018(+) (abrB) [Bacillus sp. ZJS3]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=669639 MQW34_RS10265 WP_000648331.1 1982731..1983018(+) (abrB) [Bacillus sp. ZJS3]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAATATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516

Multiple sequence alignment