Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MQW34_RS07860 Genome accession   NZ_CP094455
Coordinates   1507950..1508552 (-) Length   200 a.a.
NCBI ID   WP_000155593.1    Uniprot ID   A0A2A7DG84
Organism   Bacillus sp. ZJS3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1502950..1513552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQW34_RS07840 (MQW34_07835) dnaD 1503269..1503976 (+) 708 WP_071757493.1 DNA replication protein DnaD -
  MQW34_RS07845 (MQW34_07840) nth 1503992..1504639 (+) 648 WP_243499821.1 endonuclease III -
  MQW34_RS07850 (MQW34_07845) - 1504643..1505161 (+) 519 WP_243499823.1 YpoC family protein -
  MQW34_RS07855 (MQW34_07850) - 1505185..1507884 (-) 2700 WP_210625653.1 PBP1A family penicillin-binding protein -
  MQW34_RS07860 (MQW34_07855) recU 1507950..1508552 (-) 603 WP_000155593.1 Holliday junction resolvase RecU Machinery gene
  MQW34_RS07865 (MQW34_07860) - 1508656..1509681 (+) 1026 WP_243499824.1 DUF2515 domain-containing protein -
  MQW34_RS07870 (MQW34_07865) - 1509805..1509981 (-) 177 WP_001982922.1 hypothetical protein -
  MQW34_RS07875 (MQW34_07870) - 1510067..1510309 (+) 243 WP_001252043.1 hypothetical protein -
  MQW34_RS07880 (MQW34_07875) - 1510325..1510669 (+) 345 WP_000872959.1 YppE family protein -
  MQW34_RS07885 (MQW34_07880) - 1510696..1510887 (-) 192 WP_000242661.1 YppF family protein -
  MQW34_RS07890 (MQW34_07885) - 1511065..1511544 (+) 480 WP_000487704.1 YppG family protein -
  MQW34_RS07895 (MQW34_07890) - 1511700..1512101 (+) 402 WP_243499826.1 spore coat protein -
  MQW34_RS07900 (MQW34_07895) - 1512158..1512712 (+) 555 WP_078418394.1 DUF1273 domain-containing protein -
  MQW34_RS07905 (MQW34_07900) gpsB 1512810..1513148 (+) 339 WP_000622430.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23312.63 Da        Isoelectric Point: 9.5601

>NTDB_id=669638 MQW34_RS07860 WP_000155593.1 1507950..1508552(-) (recU) [Bacillus sp. ZJS3]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIVEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=669638 MQW34_RS07860 WP_000155593.1 1507950..1508552(-) (recU) [Bacillus sp. ZJS3]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAGACAAAAAATAA
AACGAGCTTTCCACTTCAAAACTTCCACCTCCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAACATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7DG84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625

Multiple sequence alignment