Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MQW34_RS06465 Genome accession   NZ_CP094455
Coordinates   1252446..1252769 (-) Length   107 a.a.
NCBI ID   WP_000578883.1    Uniprot ID   A0A150B540
Organism   Bacillus sp. ZJS3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1247446..1257769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQW34_RS06440 (MQW34_06440) - 1247721..1249007 (+) 1287 WP_000247650.1 D-alanyl-D-alanine carboxypeptidase family protein -
  MQW34_RS06445 (MQW34_06445) sipW 1249199..1249768 (+) 570 WP_000767812.1 signal peptidase I SipW -
  MQW34_RS06450 (MQW34_06450) - 1249831..1250418 (+) 588 WP_000172840.1 CalY family protein -
  MQW34_RS06455 (MQW34_06455) - 1250580..1251380 (+) 801 WP_243499685.1 DUF4047 domain-containing protein -
  MQW34_RS06460 (MQW34_06460) calY 1251777..1252370 (+) 594 WP_000053731.1 biofilm matrix protein CalY -
  MQW34_RS06465 (MQW34_06465) sinR 1252446..1252769 (-) 324 WP_000578883.1 helix-turn-helix domain-containing protein Regulator
  MQW34_RS06470 (MQW34_06470) - 1252849..1252983 (-) 135 WP_000276215.1 anti-repressor SinI family protein -
  MQW34_RS06475 (MQW34_06475) inhA1 1253327..1255714 (+) 2388 WP_243499687.1 M6 family metalloprotease immune inhibitor InhA1 -
  MQW34_RS06480 (MQW34_06480) - 1255886..1257253 (+) 1368 WP_210627727.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12358.20 Da        Isoelectric Point: 9.6248

>NTDB_id=669636 MQW34_RS06465 WP_000578883.1 1252446..1252769(-) (sinR) [Bacillus sp. ZJS3]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=669636 MQW34_RS06465 WP_000578883.1 1252446..1252769(-) (sinR) [Bacillus sp. ZJS3]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATTGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGCGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150B540

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment