Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   MQW34_RS06055 Genome accession   NZ_CP094455
Coordinates   1179371..1181197 (+) Length   608 a.a.
NCBI ID   WP_243499628.1    Uniprot ID   -
Organism   Bacillus sp. ZJS3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1174371..1186197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQW34_RS06035 (MQW34_06035) - 1174694..1175368 (-) 675 WP_000362620.1 TerC family protein -
  MQW34_RS06040 (MQW34_06040) mecA 1175695..1176378 (+) 684 WP_000350720.1 adaptor protein MecA Regulator
  MQW34_RS06045 (MQW34_06045) - 1176451..1177995 (+) 1545 WP_048526701.1 cardiolipin synthase -
  MQW34_RS06050 (MQW34_06050) - 1178076..1179320 (+) 1245 WP_098521075.1 competence protein CoiA -
  MQW34_RS06055 (MQW34_06055) pepF 1179371..1181197 (+) 1827 WP_243499628.1 oligoendopeptidase F Regulator
  MQW34_RS06060 (MQW34_06060) - 1181328..1181501 (-) 174 WP_000754593.1 hypothetical protein -
  MQW34_RS06065 (MQW34_06065) - 1181731..1182624 (-) 894 WP_078417535.1 ClpXP adapter SpxH family protein -
  MQW34_RS06070 (MQW34_06070) - 1182624..1183022 (-) 399 WP_000043381.1 hypothetical protein -
  MQW34_RS06075 (MQW34_06075) - 1183203..1183781 (-) 579 WP_078417534.1 CYTH domain-containing protein -
  MQW34_RS06080 (MQW34_06080) - 1183928..1184299 (+) 372 WP_078417533.1 hypothetical protein -
  MQW34_RS06085 (MQW34_06085) - 1184330..1184968 (+) 639 WP_078417532.1 GTP pyrophosphokinase family protein -
  MQW34_RS06090 (MQW34_06090) - 1184987..1185784 (+) 798 WP_078417531.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70304.60 Da        Isoelectric Point: 4.6458

>NTDB_id=669635 MQW34_RS06055 WP_243499628.1 1179371..1181197(+) (pepF) [Bacillus sp. ZJS3]
MSEQNTAKTLPDRNEIEESSTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEIEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=669635 MQW34_RS06055 WP_243499628.1 1179371..1181197(+) (pepF) [Bacillus sp. ZJS3]
ATGTCTGAACAAAACACAGCAAAAACATTACCGGATCGCAACGAGATTGAAGAATCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGTTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCATTAAATGACCGCGCAACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACACTACAAACATTCTTGA
AAGAAAATAGAGACTTAAGTGTATATGAGCATGCGTTAGAAGAAATTACGCGTCAACGCCCTCACGTATTATCTGAAGCG
GAAGAAGCTTTATTAGCAGAAGCATCTGAAGTAATGAGTGCGTCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGCGAGGATGGAGAAGAAATAGAAATTACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTACGCGAAGATGCGTTCAAAGCTGTATATGAAACGTACGGAAAATATAAGAACACATTTGCAAGTACG
TTAAGCGGAGCTGTGAAACGTAATAATTTCAATGCCCGAGTTCGCAAATACGATTCTGCACGTCAAGCTGCATTAAGTAA
TAATAATATTCCTGAAGCGGTGTATGATCAACTTGTTGAATCTGTAAATGATAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGGCTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AACGTGAAGTATGAAGAAGCACAAGACATGTTATTAAAGTCTTTACATGTACTTGGTGATGAGTATGTTGATATTTTAAA
AGAAGCATATGAAAATCGTTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCTTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAATTTGGGCATTCT
GTGCATAGTTACTACACAAGAAAAACGCAGCCGCACGTATACGGTGACTATTCAATCTTTGTTGCGGAAGTAGCATCAAC
TTGTAATGAAGCATTGCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATTATTCATAAGAAAGTACAA
GAGGGACATGCGGTTACGCCAGACATGTTAACGGAGATCTACTATGATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATTGATGAAGAAATTGGTTTAGAGTGGTCACGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GATTTAGTGCAGCAACGGCTCTATCTAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAACGCTATATTAATGAGTTC
TTAAAAGCAGGAAGTTCGGATTATCCAATTGAAGTGCTGAAAAAAGCTGGAGTAGATATGGCATCTCCAGAACCGGTAAA
AGAAGCATTGCAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.084

97.533

0.488

Multiple sequence alignment