Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG866_RS25280 Genome accession   NZ_CP109027
Coordinates   5544332..5545330 (+) Length   332 a.a.
NCBI ID   WP_329338061.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00663     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5539332..5550330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG866_RS25260 (OG866_25240) - 5539956..5540597 (+) 642 WP_329338055.1 TetR/AcrR family transcriptional regulator -
  OG866_RS25265 (OG866_25245) - 5540756..5542297 (+) 1542 WP_329338057.1 MFS transporter -
  OG866_RS25270 (OG866_25250) - 5542402..5542893 (-) 492 WP_329338058.1 MarR family transcriptional regulator -
  OG866_RS25275 (OG866_25255) - 5543027..5543833 (+) 807 WP_329338059.1 class III extradiol ring-cleavage dioxygenase -
  OG866_RS25280 (OG866_25260) rpoS 5544332..5545330 (+) 999 WP_329338061.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG866_RS25285 (OG866_25265) - 5545849..5546484 (+) 636 WP_329344288.1 TetR family transcriptional regulator -
  OG866_RS25290 (OG866_25270) - 5546555..5547538 (-) 984 WP_329338062.1 WYL domain-containing protein -
  OG866_RS25295 (OG866_25275) - 5547601..5549118 (+) 1518 WP_329338063.1 MFS transporter -
  OG866_RS25300 (OG866_25280) - 5549375..5550136 (+) 762 WP_329338065.1 DeoR/GlpR family DNA-binding transcription regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37339.07 Da        Isoelectric Point: 4.9701

>NTDB_id=669575 OG866_RS25280 WP_329338061.1 5544332..5545330(+) (rpoS) [Streptomyces sp. NBC_00663]
MATRAVARRQSASGGAVDKARSVRAHAGEIADRDLVGMYLDEIARTPLLDAAKEVELSQMIEAGVFARQVLDGYEESKAD
ATREELEALVDEAERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEIAQELGSTPERVTDVLDWARDPVSLNMSIDDDGDTQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=669575 OG866_RS25280 WP_329338061.1 5544332..5545330(+) (rpoS) [Streptomyces sp. NBC_00663]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGTCCGCCTCCGGTGGGGCCGTCGACAAGGCACGCAGTGTTCGCGCCCACGC
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTATCTCGACGAGATCGCGCGTACCCCGCTGCTCGACGCCGCCAAGG
AAGTCGAGCTGTCCCAGATGATCGAAGCGGGTGTGTTCGCGCGGCAGGTTCTCGACGGGTACGAGGAGTCCAAGGCGGAC
GCCACCCGCGAGGAGCTCGAAGCGCTGGTCGACGAGGCCGAGCGGGCCAAGGACGTCTTCATCCGGTCCAACCTCCGCCT
CGTGGTCGCGGTCGCCCGCCGCTACCCGCGCAGCGGCCTCCCCCTCCTCGACCTGATCCAGGAGGGCAACGCGGGCCTGG
TGCGCGCGGTGGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCCACGTACGCCACCTGGTGGATCCGCCAGGCGATC
ACCCGCTCGATAGCCGACCAGTCGCGCACGATCCGCCTCCCCGTCCACCTCGTGGAGGAACTCGGCCGTATCCGCCGGGT
CCAGCGCGAGTTCAACCGGGAGAACGGCCGCGACCCGGAGCCCGCCGAGATCGCACAGGAGCTGGGCTCCACCCCCGAGC
GCGTGACGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGATCGACGACGACGGCGACACCCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTCCTGACCCTCCTGCGCAGCGAGGAACTGGACGA
CCTGATCGGCCGCCTCGACCAGCGCACGGCGTCCATCATCAAGATGCGCTACGGCATCGACGACGGCCGGGAGCGCACCC
TGACCGAGGTCGGCAAGGAGCACGGGCTGACGCGCGAGCGCATCCGCCAGATCGAGAAGCACGCCCTGCTGGAACTGAAG
AAGCTGGCCCGGGACACGGGTTTCGACGCGGCGGCGTAG

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70, region 4 (Sigma70_r4)

(269-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.137

90.06

0.37