Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   MRY16_RS13810 Genome accession   NZ_CP094445
Coordinates   2969469..2969795 (-) Length   108 a.a.
NCBI ID   WP_004958548.1    Uniprot ID   A0A8I0S2H5
Organism   Acinetobacter junii strain A2-1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2964469..2974795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRY16_RS13790 (MRY16_13790) - 2964725..2965336 (-) 612 WP_099949312.1 FHA domain-containing protein -
  MRY16_RS13795 (MRY16_13795) gspD 2965400..2967655 (-) 2256 WP_243483483.1 type II secretion system secretin GspD -
  MRY16_RS13800 (MRY16_13800) - 2967697..2968545 (-) 849 WP_125272408.1 type II secretion system protein N -
  MRY16_RS13805 (MRY16_13805) gspN 2968545..2969288 (-) 744 WP_243484925.1 type II secretion system protein N -
  MRY16_RS13810 (MRY16_13810) hns 2969469..2969795 (-) 327 WP_004958548.1 H-NS histone family protein Regulator
  MRY16_RS13815 (MRY16_13815) - 2970178..2970609 (-) 432 WP_004957383.1 thioesterase family protein -
  MRY16_RS13820 (MRY16_13820) - 2970618..2971811 (-) 1194 WP_243483485.1 heme biosynthesis protein HemY -
  MRY16_RS13825 (MRY16_13825) - 2971818..2972648 (-) 831 WP_243483487.1 hypothetical protein -
  MRY16_RS13830 (MRY16_13830) - 2972645..2973421 (-) 777 WP_243483489.1 uroporphyrinogen-III synthase -
  MRY16_RS13835 (MRY16_13835) hemC 2973423..2974340 (-) 918 WP_243483491.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12343.00 Da        Isoelectric Point: 5.0355

>NTDB_id=669552 MRY16_RS13810 WP_004958548.1 2969469..2969795(-) (hns) [Acinetobacter junii strain A2-1]
MKPDISDLSVEDLKRLQAEAEALIASKKDQAIEDAYNQIIAIAENVGYSVEELLELGEQKRKKTTRKAVEPRYRNKNNAE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=669552 MRY16_RS13810 WP_004958548.1 2969469..2969795(-) (hns) [Acinetobacter junii strain A2-1]
ATGAAACCAGATATTAGTGATTTATCTGTTGAAGATCTCAAGCGTTTGCAAGCTGAGGCTGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATTGCGATTGCTGAAAACGTTGGATACAGCGTTGAAGAGCTTT
TGGAGCTTGGTGAGCAAAAACGTAAGAAAACAACCCGTAAAGCTGTTGAGCCGCGTTACCGTAATAAAAATAATGCAGAA
GAAACTTGGACAGGTCGCGGTAAGCAACCTCGTTGGTTAGTTGCAGAATTAGAGAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

90.741

100

0.907

Multiple sequence alignment