Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   MRY16_RS12765 Genome accession   NZ_CP094445
Coordinates   2750839..2751726 (-) Length   295 a.a.
NCBI ID   WP_004957789.1    Uniprot ID   -
Organism   Acinetobacter junii strain A2-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2745839..2756726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRY16_RS12745 (MRY16_12745) - 2746219..2747292 (+) 1074 WP_004916462.1 PhoH family protein -
  MRY16_RS12750 (MRY16_12750) ybeY 2747574..2748059 (+) 486 WP_243483342.1 rRNA maturation RNase YbeY -
  MRY16_RS12755 (MRY16_12755) - 2748071..2748370 (+) 300 WP_151738755.1 antibiotic biosynthesis monooxygenase -
  MRY16_RS12760 (MRY16_12760) - 2748435..2750585 (-) 2151 WP_243483344.1 TonB-dependent siderophore receptor -
  MRY16_RS12765 (MRY16_12765) tonB2 2750839..2751726 (-) 888 WP_004957789.1 TonB family protein Machinery gene
  MRY16_RS12770 (MRY16_12770) - 2751971..2752648 (+) 678 WP_243483346.1 hypothetical protein -
  MRY16_RS12775 (MRY16_12775) - 2752842..2753558 (+) 717 WP_004916473.1 DUF3108 domain-containing protein -
  MRY16_RS12780 (MRY16_12780) - 2753647..2754222 (+) 576 WP_087540917.1 xanthine phosphoribosyltransferase -
  MRY16_RS12785 (MRY16_12785) thyA 2754381..2755223 (+) 843 WP_004916477.1 thymidylate synthase -
  MRY16_RS12790 (MRY16_12790) - 2755244..2755753 (+) 510 WP_004957782.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33505.04 Da        Isoelectric Point: 8.3911

>NTDB_id=669547 MRY16_RS12765 WP_004957789.1 2750839..2751726(-) (tonB2) [Acinetobacter junii strain A2-1]
MWNKINFRSELSSHWWQDSIFVGAVILALLLHLAVLAVQFAMPTPSDTSTKEIAVSIRPSTDKVENADFLAQADQKGSGE
FREAHRMSSDMPSPMQADATTGETEFESLEKIQQKRELKFEEKVLMTVLSWQKQAEQSERKKALEDLQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDAAKQQRLSGEVRLMVILNSQGGIRAIRL
IESSGHSILDEAAKASVRRGAPFGAFDSTMKKDISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 888 bp        

>NTDB_id=669547 MRY16_RS12765 WP_004957789.1 2750839..2751726(-) (tonB2) [Acinetobacter junii strain A2-1]
ATGTGGAATAAAATAAATTTTCGTTCGGAGTTGTCATCTCATTGGTGGCAAGACTCAATTTTTGTAGGGGCTGTGATTTT
AGCATTGCTTCTGCATTTGGCTGTGCTTGCGGTACAGTTTGCTATGCCAACTCCATCCGATACCTCCACAAAGGAAATCG
CAGTTTCTATTCGCCCTAGTACCGATAAAGTAGAAAATGCTGATTTTCTCGCTCAAGCCGATCAAAAGGGTTCTGGTGAG
TTTCGAGAAGCACATCGCATGTCGAGTGATATGCCTTCACCGATGCAAGCTGATGCGACTACAGGTGAAACTGAGTTTGA
AAGCTTAGAAAAAATTCAGCAAAAGCGCGAGTTAAAATTTGAAGAAAAAGTTTTAATGACCGTATTGAGCTGGCAGAAAC
AGGCAGAACAAAGCGAGCGTAAAAAAGCCTTAGAGGATTTACAAAGTCAGTTCCAAGCAAAAGCTGCCATGGTTGCTAGT
CTTGAAGCTCAGTATTTACAACGACAACAAAATTTTAGCCGTAAACAACGGATTAAAACGGTAGATGGTATTCAAGCTAA
ACAGGATGCTTCTGCTGCGTATCTAGATAAATTCCGCCAAAAAGTTGAACTGTATGGAAATCGCTATTACCCAGATGCTG
CTAAACAACAGCGGTTATCGGGTGAAGTTAGATTAATGGTTATTCTGAACTCACAGGGTGGGATACGTGCAATTCGTTTA
ATTGAGAGTTCGGGACATTCTATTTTAGATGAAGCAGCTAAAGCTTCAGTGCGCCGTGGAGCTCCTTTTGGTGCATTTGA
TTCCACGATGAAGAAGGATATTTCTGAATTACGTATCATTCGAACTTGGCGTTTTGATCCAGTGGATGCTGAGTTTGAAG
TGCATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.949

100

0.769

Multiple sequence alignment