Detailed information
Bioinformatically predicted
Overview
| Name | comA | Type | Machinery gene |
| Locus tag | GM3709_RS09130 | Genome accession | NZ_AP014821 |
| Coordinates | 2129903..2131195 (-) | Length | 430 a.a. |
| NCBI ID | WP_066118508.1 | Uniprot ID | A0A0D6AQQ6 |
| Organism | Geminocystis sp. NIES-3709 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2124903..2136195
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GM3709_RS09105 (GM3709_1896) | map | 2125517..2126290 (+) | 774 | WP_144439467.1 | type I methionyl aminopeptidase | - |
| GM3709_RS09110 (GM3709_1897) | pgl | 2126336..2127052 (+) | 717 | WP_066118500.1 | 6-phosphogluconolactonase | - |
| GM3709_RS09115 (GM3709_1898) | - | 2127167..2127637 (+) | 471 | WP_066118502.1 | FHA domain-containing protein | - |
| GM3709_RS09120 (GM3709_1899) | - | 2127949..2128305 (+) | 357 | WP_144439424.1 | hypothetical protein | - |
| GM3709_RS09125 (GM3709_1900) | chlP | 2128323..2129546 (-) | 1224 | WP_066118506.1 | geranylgeranyl reductase | - |
| GM3709_RS09130 (GM3709_1901) | comA | 2129903..2131195 (-) | 1293 | WP_066118508.1 | phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein | Machinery gene |
| GM3709_RS09135 (GM3709_1902) | - | 2131209..2131889 (-) | 681 | WP_066118510.1 | uracil-DNA glycosylase family protein | - |
| GM3709_RS09140 (GM3709_1903) | mreD | 2132036..2132584 (-) | 549 | WP_066118512.1 | rod shape-determining protein MreD | - |
| GM3709_RS09145 (GM3709_1904) | - | 2132714..2133838 (+) | 1125 | WP_066121840.1 | class I SAM-dependent RNA methyltransferase | - |
| GM3709_RS09150 (GM3709_1905) | - | 2134015..2134764 (+) | 750 | WP_066118515.1 | glycosyltransferase family 2 protein | - |
| GM3709_RS20445 (GM3709_1906) | - | 2135042..2135188 (+) | 147 | WP_158506711.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 430 a.a. Molecular weight: 48137.99 Da Isoelectric Point: 8.2212
>NTDB_id=66945 GM3709_RS09130 WP_066118508.1 2129903..2131195(-) (comA) [Geminocystis sp. NIES-3709]
MLKTISLSLSIVSYLLFLNSCQSQPQKLPSLPQDSDIQVYFNHNQAKGKEYLDSYRNIVRYGDNLEAVMIEQINSAKSTL
DIAVQEINLSNLAKVIVKKKDEGIKVRVVIENNYNLPLNKLNNRDGLAILKQANIPIIDDREDGTKGSGLMHHKFIVIDG
KKVVTGSTNFTLSDVHGDIDNLETRGNINHLLVINSAELAKIFSKEFNYLWGDGVGKKKDSLFGIKKPDRPPKTVKIGDS
TVTVKFSPNSPTKFLYNTSNGLISNTLQSAKNSINLALFVFSDQGIANTLQKKSLEGVKIKALIDPNFAYQYYSEGLDLL
GIALPFKCKYQLNNNPWKNPIETVGIPNLLKGDKLHHKFGIIDNYTVITGSHNWSNAANHINDETLLIIYNPLIAQHFSQ
EFDYLYQEAILGIPDNIQEKLETETAKCQN
MLKTISLSLSIVSYLLFLNSCQSQPQKLPSLPQDSDIQVYFNHNQAKGKEYLDSYRNIVRYGDNLEAVMIEQINSAKSTL
DIAVQEINLSNLAKVIVKKKDEGIKVRVVIENNYNLPLNKLNNRDGLAILKQANIPIIDDREDGTKGSGLMHHKFIVIDG
KKVVTGSTNFTLSDVHGDIDNLETRGNINHLLVINSAELAKIFSKEFNYLWGDGVGKKKDSLFGIKKPDRPPKTVKIGDS
TVTVKFSPNSPTKFLYNTSNGLISNTLQSAKNSINLALFVFSDQGIANTLQKKSLEGVKIKALIDPNFAYQYYSEGLDLL
GIALPFKCKYQLNNNPWKNPIETVGIPNLLKGDKLHHKFGIIDNYTVITGSHNWSNAANHINDETLLIIYNPLIAQHFSQ
EFDYLYQEAILGIPDNIQEKLETETAKCQN
Nucleotide
Download Length: 1293 bp
>NTDB_id=66945 GM3709_RS09130 WP_066118508.1 2129903..2131195(-) (comA) [Geminocystis sp. NIES-3709]
ATGCTCAAAACAATTTCTTTATCTCTTAGTATAGTCAGTTATTTATTATTTTTAAATAGTTGTCAAAGTCAACCTCAAAA
ATTGCCTTCTTTACCTCAAGATTCTGACATTCAAGTATATTTTAATCATAACCAAGCTAAAGGAAAAGAATATTTAGATT
CTTACCGCAATATTGTGCGTTATGGCGATAATTTAGAAGCAGTTATGATTGAGCAAATTAACTCCGCAAAATCTACTCTT
GACATAGCCGTACAAGAAATTAATTTAAGTAATTTAGCAAAAGTAATTGTTAAAAAAAAAGATGAAGGAATTAAAGTTAG
AGTAGTCATAGAAAATAATTATAATTTACCATTAAATAAACTTAATAACCGTGATGGATTAGCTATTTTAAAACAAGCTA
ATATACCAATAATTGACGATCGAGAAGATGGGACAAAAGGAAGCGGATTAATGCACCATAAATTTATTGTTATTGACGGG
AAAAAAGTTGTTACAGGTTCAACTAATTTTACTCTCAGTGATGTTCATGGAGATATTGATAATTTAGAAACAAGAGGTAA
TATTAATCATTTATTAGTAATAAATAGTGCTGAATTAGCTAAAATTTTTAGTAAAGAATTTAATTATCTTTGGGGTGATG
GAGTAGGTAAGAAAAAAGATAGTTTATTTGGAATAAAAAAACCCGATCGACCGCCAAAAACCGTTAAAATTGGCGATAGT
ACTGTCACGGTGAAATTTTCTCCTAATTCACCCACTAAATTTTTATATAACACGTCCAATGGTCTAATTTCTAATACTTT
ACAATCCGCCAAAAATTCGATTAATTTAGCCTTATTTGTTTTTAGTGATCAAGGAATAGCTAATACTTTGCAAAAAAAAT
CTTTAGAAGGAGTAAAAATCAAGGCATTAATTGATCCTAATTTTGCTTATCAATACTACAGTGAAGGACTCGATTTATTA
GGCATTGCATTACCCTTTAAATGTAAGTATCAACTAAACAATAATCCTTGGAAAAACCCGATCGAAACTGTCGGAATACC
AAACTTACTCAAGGGAGATAAGTTACATCATAAATTTGGGATAATTGATAATTACACAGTTATTACAGGCTCTCATAATT
GGTCAAATGCCGCTAATCATATTAACGATGAAACTCTTTTAATCATCTATAATCCTTTAATTGCACAACACTTTAGTCAA
GAATTTGACTATCTTTATCAAGAAGCAATACTCGGTATTCCCGACAATATTCAGGAAAAACTGGAAACGGAAACCGCCAA
ATGTCAAAATTAA
ATGCTCAAAACAATTTCTTTATCTCTTAGTATAGTCAGTTATTTATTATTTTTAAATAGTTGTCAAAGTCAACCTCAAAA
ATTGCCTTCTTTACCTCAAGATTCTGACATTCAAGTATATTTTAATCATAACCAAGCTAAAGGAAAAGAATATTTAGATT
CTTACCGCAATATTGTGCGTTATGGCGATAATTTAGAAGCAGTTATGATTGAGCAAATTAACTCCGCAAAATCTACTCTT
GACATAGCCGTACAAGAAATTAATTTAAGTAATTTAGCAAAAGTAATTGTTAAAAAAAAAGATGAAGGAATTAAAGTTAG
AGTAGTCATAGAAAATAATTATAATTTACCATTAAATAAACTTAATAACCGTGATGGATTAGCTATTTTAAAACAAGCTA
ATATACCAATAATTGACGATCGAGAAGATGGGACAAAAGGAAGCGGATTAATGCACCATAAATTTATTGTTATTGACGGG
AAAAAAGTTGTTACAGGTTCAACTAATTTTACTCTCAGTGATGTTCATGGAGATATTGATAATTTAGAAACAAGAGGTAA
TATTAATCATTTATTAGTAATAAATAGTGCTGAATTAGCTAAAATTTTTAGTAAAGAATTTAATTATCTTTGGGGTGATG
GAGTAGGTAAGAAAAAAGATAGTTTATTTGGAATAAAAAAACCCGATCGACCGCCAAAAACCGTTAAAATTGGCGATAGT
ACTGTCACGGTGAAATTTTCTCCTAATTCACCCACTAAATTTTTATATAACACGTCCAATGGTCTAATTTCTAATACTTT
ACAATCCGCCAAAAATTCGATTAATTTAGCCTTATTTGTTTTTAGTGATCAAGGAATAGCTAATACTTTGCAAAAAAAAT
CTTTAGAAGGAGTAAAAATCAAGGCATTAATTGATCCTAATTTTGCTTATCAATACTACAGTGAAGGACTCGATTTATTA
GGCATTGCATTACCCTTTAAATGTAAGTATCAACTAAACAATAATCCTTGGAAAAACCCGATCGAAACTGTCGGAATACC
AAACTTACTCAAGGGAGATAAGTTACATCATAAATTTGGGATAATTGATAATTACACAGTTATTACAGGCTCTCATAATT
GGTCAAATGCCGCTAATCATATTAACGATGAAACTCTTTTAATCATCTATAATCCTTTAATTGCACAACACTTTAGTCAA
GAATTTGACTATCTTTATCAAGAAGCAATACTCGGTATTCCCGACAATATTCAGGAAAAACTGGAAACGGAAACCGCCAA
ATGTCAAAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comA | Synechocystis sp. PCC 6803 |
49.767 |
100 |
0.498 |