Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHA81_RS23555 Genome accession   NZ_CP109022
Coordinates   5075988..5076779 (-) Length   263 a.a.
NCBI ID   WP_329198907.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00667     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5070988..5081779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA81_RS23540 (OHA81_23545) - 5071122..5071751 (+) 630 WP_329202510.1 GNAT family N-acetyltransferase -
  OHA81_RS23545 (OHA81_23550) - 5071946..5073805 (+) 1860 WP_329202512.1 IucA/IucC family siderophore biosynthesis protein -
  OHA81_RS23550 (OHA81_23555) - 5073870..5075840 (+) 1971 WP_329198906.1 ATP-dependent DNA helicase -
  OHA81_RS23555 (OHA81_23560) dinR/lexA 5075988..5076779 (-) 792 WP_329198907.1 transcriptional repressor LexA Regulator
  OHA81_RS23560 (OHA81_23565) nrdR 5077249..5077764 (+) 516 WP_329198908.1 transcriptional regulator NrdR -
  OHA81_RS23565 (OHA81_23570) - 5077900..5080800 (+) 2901 WP_329198909.1 vitamin B12-dependent ribonucleotide reductase -
  OHA81_RS23570 (OHA81_23575) - 5080928..5081287 (-) 360 WP_329198910.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28564.31 Da        Isoelectric Point: 8.0907

>NTDB_id=669430 OHA81_RS23555 WP_329198907.1 5075988..5076779(-) (dinR/lexA) [Streptomyces sp. NBC_00667]
MTTTADSATITAQNRSQSRVEPVHAMNDARQNPEAESVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=669430 OHA81_RS23555 WP_329198907.1 5075988..5076779(-) (dinR/lexA) [Streptomyces sp. NBC_00667]
GTGACCACGACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGAGTTGAGCCGGTGCATGCCATGAA
CGACGCACGTCAGAACCCGGAGGCGGAGTCCGTGCGCCCCGCACGCTCGCTGCCAGGGCGACCTCCAGGCATTCGCGCCG
ACAGCTCCGGGCTCACGGACCGGCAGCGCAGGGTCATCGAGGTCATCCGCGATTCGGTGCAGCGCCGGGGCTACCCGCCG
TCGATGCGCGAGATCGGCCAGGCGGTCGGCCTGTCGAGCACGTCGTCGGTCGCCCACCAGCTGATGGCCCTCGAGCGCAA
GGGGTTCCTGCGGCGCGACCCGCACCGCCCGCGGGCCTACGAGGTGCGCGGCTCGGACCAGCCCAGCTCGCAGCCCACCG
ACACCACCGGCAAGCCCGCCGCCTCCTACGTTCCCCTGGTCGGACGGATCGCCGCCGGCGGCCCGATCCTCGCCGAGGAG
TCGGTGGAGGACGTCTTCCCGCTCCCCCGCCAGCTGGTCGGCGACGGCGAACTCTTCGTCCTCAAGGTCGTCGGTGACTC
GATGATCGAGGCGGCCATCTGCGACGGCGACTGGGTCACCGTCCGCCGTCAGCCCGTCGCGGAGAACGGCGACATCGTCG
CCGCGATGCTGGACGGCGAGGCCACCGTCAAGCGGTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTTCCGCACAACGCC
GCGTACCAGCCCATCCCCGGCGACGAAGCCACCATCCTCGGCAAGGTCGTCGCCGTTCTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(56-119)

Peptidase S24-like (Peptidase_S24)

(145-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.608

0.376