Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | GM3709_RS03105 | Genome accession | NZ_AP014821 |
| Coordinates | 738329..738700 (-) | Length | 123 a.a. |
| NCBI ID | WP_066116191.1 | Uniprot ID | A0A0D6AM17 |
| Organism | Geminocystis sp. NIES-3709 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 733329..743700
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GM3709_RS03085 (GM3709_644) | - | 733468..733995 (-) | 528 | WP_066116182.1 | shikimate kinase | - |
| GM3709_RS03090 (GM3709_645) | - | 734012..734956 (-) | 945 | WP_066116184.1 | NAD(P)-dependent oxidoreductase | - |
| GM3709_RS03095 (GM3709_646) | argS | 735049..736797 (-) | 1749 | WP_066116187.1 | arginine--tRNA ligase | - |
| GM3709_RS03100 (GM3709_647) | urtC | 737160..738296 (+) | 1137 | WP_066116189.1 | urea ABC transporter permease subunit UrtC | - |
| GM3709_RS03105 (GM3709_648) | pilH | 738329..738700 (-) | 372 | WP_066116191.1 | PleD family two-component system response regulator | Machinery gene |
| GM3709_RS03110 (GM3709_649) | thiL | 738909..739898 (-) | 990 | WP_066116193.1 | thiamine-phosphate kinase | - |
| GM3709_RS03115 (GM3709_650) | - | 739954..740622 (+) | 669 | WP_066116195.1 | 4'-phosphopantetheinyl transferase superfamily protein | - |
| GM3709_RS03120 (GM3709_651) | - | 741053..741397 (+) | 345 | WP_066116197.1 | hypothetical protein | - |
| GM3709_RS03125 (GM3709_652) | - | 741410..742474 (-) | 1065 | WP_066116199.1 | LOG family protein | - |
| GM3709_RS03130 (GM3709_653) | trxA | 742558..742881 (-) | 324 | WP_017294944.1 | thioredoxin | - |
Sequence
Protein
Download Length: 123 a.a. Molecular weight: 14137.54 Da Isoelectric Point: 6.2276
>NTDB_id=66939 GM3709_RS03105 WP_066116191.1 738329..738700(-) (pilH) [Geminocystis sp. NIES-3709]
MIKILVVDDNHTPREVICEALKQFNIQVKEAVNGVEATKIMEQEQFSLVITDVVMPEMNGYELCRWIKTNPTTEKVPVII
CSTKGEDFDIHWATRQGADAYIIKPFKTMELLKTIKYLLKHNG
MIKILVVDDNHTPREVICEALKQFNIQVKEAVNGVEATKIMEQEQFSLVITDVVMPEMNGYELCRWIKTNPTTEKVPVII
CSTKGEDFDIHWATRQGADAYIIKPFKTMELLKTIKYLLKHNG
Nucleotide
Download Length: 372 bp
>NTDB_id=66939 GM3709_RS03105 WP_066116191.1 738329..738700(-) (pilH) [Geminocystis sp. NIES-3709]
ATGATTAAAATTTTAGTTGTTGATGATAATCATACTCCCAGAGAAGTGATCTGCGAAGCACTAAAGCAGTTTAATATTCA
GGTAAAAGAGGCTGTGAATGGGGTAGAAGCGACCAAAATTATGGAACAAGAGCAATTTAGCTTAGTAATTACAGATGTAG
TTATGCCAGAAATGAATGGTTATGAATTATGTCGTTGGATAAAAACAAATCCTACCACAGAGAAAGTTCCCGTAATCATT
TGTTCCACAAAAGGAGAAGACTTTGACATTCACTGGGCTACAAGACAAGGGGCTGATGCCTATATCATTAAACCTTTTAA
AACAATGGAATTACTTAAAACCATTAAATATCTACTGAAACACAATGGATAG
ATGATTAAAATTTTAGTTGTTGATGATAATCATACTCCCAGAGAAGTGATCTGCGAAGCACTAAAGCAGTTTAATATTCA
GGTAAAAGAGGCTGTGAATGGGGTAGAAGCGACCAAAATTATGGAACAAGAGCAATTTAGCTTAGTAATTACAGATGTAG
TTATGCCAGAAATGAATGGTTATGAATTATGTCGTTGGATAAAAACAAATCCTACCACAGAGAAAGTTCCCGTAATCATT
TGTTCCACAAAAGGAGAAGACTTTGACATTCACTGGGCTACAAGACAAGGGGCTGATGCCTATATCATTAAACCTTTTAA
AACAATGGAATTACTTAAAACCATTAAATATCTACTGAAACACAATGGATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
52.893 |
98.374 |
0.52 |