Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   MQC90_RS13410 Genome accession   NZ_CP094361
Coordinates   2553199..2554236 (-) Length   345 a.a.
NCBI ID   WP_009967727.1    Uniprot ID   A0AAE2SM96
Organism   Bacillus subtilis strain NCIB 3610     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2548199..2559236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQC90_RS13360 tasA 2548297..2549082 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  MQC90_RS13365 sipW 2549146..2549718 (-) 573 WP_003246088.1 signal peptidase I -
  MQC90_RS13370 tapA 2549702..2550463 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  MQC90_RS13375 yqzG 2550735..2551061 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  MQC90_RS13380 spoIIT 2551103..2551282 (-) 180 WP_003230176.1 YqzE family protein -
  MQC90_RS13385 comGG 2551353..2551727 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  MQC90_RS13390 comGF 2551728..2552111 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  MQC90_RS13395 comGE 2552137..2552484 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  MQC90_RS13400 comGD 2552468..2552899 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  MQC90_RS13405 comGC 2552889..2553185 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  MQC90_RS13410 comGB 2553199..2554236 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  MQC90_RS13415 comGA 2554223..2555293 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  MQC90_RS13420 corA 2555705..2556658 (-) 954 WP_004399136.1 magnesium transporter CorA -
  MQC90_RS13425 yqhB 2556801..2558129 (+) 1329 WP_009967730.1 hemolysin family protein -
  MQC90_RS13430 rsbRD 2558182..2559018 (-) 837 WP_004398754.1 RsbT co-antagonist protein RsbRD -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39762.26 Da        Isoelectric Point: 9.6257

>NTDB_id=669290 MQC90_RS13410 WP_009967727.1 2553199..2554236(-) (comGB) [Bacillus subtilis strain NCIB 3610]
MKKIRKVWLLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDSVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLVLFTAGIGIYYWLVFKKKSPARQMLICIRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIESAICGSLFYETDLSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=669290 MQC90_RS13410 WP_009967727.1 2553199..2554236(-) (comGB) [Bacillus subtilis strain NCIB 3610]
ATGAAAAAGATTAGAAAAGTCTGGTTGTTAAAGGATCAAGCCAGGTTATTAAAGAGGCTCGGTGAAATGACTGCGGGCGG
ATATACACTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATTCGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCAATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTTGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTATCAGGATTCCTTTGGTTGGAAAGCTTGTAAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAATCCGCTATTTG
TGGAAGCCTTTTTTATGAAACTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGGGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)

Type II secretion system (T2SS), protein F (T2SSF)

(17-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

100

93.623

0.936

Multiple sequence alignment